Jules Janick, Don Langevin, Ying Li and Mathias Willemijns. Record giant pumpkin fruit weights: 1857 to 2017.  Chronica Horticulturae 58(2) (2018)in press 

Ryan M Patrick, Ying Li. Experimental and Bioinformatics Advances in Crop Genomics. Plant Breeding Reviews. Vol42 (2018). in press

Alessia Para, Ying Li, and Gloria M Coruzzi. μChIP-Seq for genome-wide mapping of in vivo TF-DNA interactions in Arabidopsis root protoplasts. Protocol for methods in molecular biology, Root Development (2018) pp249-261.  in press

Joan Doidy, Ying Li, Benjamin Neymotin, Molly B Edwards, Kranthi Varala, David Gresham, Gloria M Coruzzi. “Hit-and-Run” transcription: de novo transcription initiated by a transient bZIP1 “hit” persists after the “run”. BMC Genomics: 17: 92 (2016)

PMCID: PMC4738784

Kranthi Varala, Ying Li, Amy Marshall-Colón, Alessia Para, Gloria M Coruzzi. Hit-and-Run leaves its mark: Catalyst transcription factors and chromatin modification. BioEssays: 37(8) (2015)

PMCID: PMC4548861

Qing Li, Ying Li, Stephen P Moose, Matthew E Hudson. Transposable elements, mRNA expression level and strand-specificity of small RNAs are associated with non-additive inheritance of gene expression in hybrid plants. BMC Plant Biology: 15 (168) (2015)

PMCID: PMC4490736

Ying Li, Kranthi Varala, Gloria M Coruzzi. From milliseconds to lifetimes: Tracking the dynamic behavior of transcription factors in gene networks. Trends in Genetics: 31(9) (2015)

PMCID: PMC4558309

Ying Li*, Indrani Mukherjee*, Karen E Thum, Milos Tanurdzic, Manpreet S Katari, Mariana Obertello, Molly B Edwards, W. Richard McCombie, Robert A Martienssen, Gloria M Coruzzi. The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology: 16 (79) (2015) *Equal contribution.

PMCID: PMC4464704

Alessia Para*, Ying Li*, Amy Marshall-Colón*, Kranthi Varala*, Nancy J Francoeur, Tara M Moran, Molly B Edwards, Christopher Hackley, Bastiaan OR Bargmann, Kenneth D Birnbaum, W Richard McCombie, Gabriel Krouk, Gloria M Coruzzi. Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis. Proceedings of the National Academy of Sciences, Vol. 111 No. 28: 10371-10376 (2014) * these authors contributed equally.

PMCID: PMC4104873

Ying Li, Gabriel Krouk, Gloria M Coruzzi, Sandrine Ruffel. Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants. Journal of Experimental Botany, 65(19): 5601-5610 (2014)

PMID: 24963003

Ying Li, Kranthi Varala, Matthew E Hudson. A survey of the small RNA population during far-red light-induced apical hook opening. Frontiers in Plant Science 5:156 (2014)

PMCID: PMC4010784

Ying Li, Kranthi Varala, Stephen P Moose, Matthew E Hudson. The inheritance pattern of 24-nt siRNA clusters in Arabidopsis hybrids is influenced by proximity to transposable elements. PLoS ONE 7 (10): e47043 (2012)

PMCID: PMC3485269

Jennifer L Burton, Marina Drigo, Ying Li, Ariane Peralta, Johanna Salzer, Kranthi Varala, Bruce Hannon, James D Westervelt. A model for evaluating hunting and contraception as Feral Hog population control methods. Ecologist-Developed Spatially-Explicit Dynamic Landscape Models: 133-150 (2012)

Ying Li, Kankshita Swaminathan, Matthew E Hudson. Rapid, organ-specific transcriptional responses to light regulate photomorphogenic development in dicot seedlings. Plant Physiology 156 (4), 2124-2140 (2011)

PMCID: PMC3149948

Kranthi Varala, Kankshita Swaminathan, Ying Li, Matthew E Hudson. Rapid genotyping of soybean cultivars using high throughput sequencing. PLoS ONE 6 (9), e24811 (2011)

PMCID: PMC3176760

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