Plants can adapt genetically to survive harsh environments

January 31, 2011

WEST LAFAYETTE, Ind. - A Purdue University scientist has found genetic evidence of how some plants adapt to live in unfavorable conditions, a finding he believes could one day be used to help food crops survive in new or changing environments.

David Salt, a professor of horticulture, noticed several years ago that a variant of the research plant Arabidopsis thaliana that could tolerate higher levels of sodium had come from coastal areas. To test the observation, Salt grew more than 300 Arabidopsis thaliana plants from seeds gathered across Europe. The plants were grown in non-saline soil and their leaf-sodium content was measured.

Each plant's origination was mapped, and those with the highest sodium contents were found to have come from seeds collected close to a coast or area with high saline soil. All plants were analyzed using genome-wide association mapping, which compares the genomes of a number of plants with a shared physical trait - in this case leaf sodium accumulation - to identify genes that may account for variation in this characteristic. Salt found that the plants that accumulate the highest sodium levels in their leaves had a weak form of the gene HTK1, which regulates sodium intake distribution to leaves.

"The major gene that is controlling variation in leaf sodium accumulation across the whole European population of Arabidopsis thaliana is HTK1," said Salt, whose findings were published in the journal PLoS Genetics. "The Arabidopsis thaliana plants that accumulated high levels of sodium had a reduced level of HTK1 gene expression. The populations that have this altered form of HTK1 are on the coast. There are a few exceptions that prove the rule, such as populations in the Czech Republic, which isn't near the coast, but come from an area containing high saline soils derived from an ancient beach."

It has long been known that plants are adapted to their local soil environments, but the molecular basis of such adaptation has remained elusive. Salt said this is some of the first evidence linking genetic changes with adaptation to specific environmental factors.

"What we're looking at is evolution in action," Salt said. "It looks like natural selection is matching expression of this gene to the local soil conditions."

Salt said crops grown around the world could be affected, possibly negatively, by climate change. It may become important to identify mechanisms to adapt plants to drought conditions, higher temperatures or changes in soil nutrition. Salt believes identifying genetic mechanisms of how plants naturally adapt to their environments will be key to solving those problems.

"Driven by natural selection, plants have been evolving to grow under harsh conditions for millennia," Salt said. "We need to understand genetically what is allowing these plants to survive these conditions."

Salt plans to continue his research to understand at the DNA level how Arabidopsis thaliana adapts to environmental conditions. The National Institutes of Health funded his work.

Writer:  Brian Wallheimer, 765-496-2050, bwallhei@purdue.edu 

Source:  David Salt, 765-496-2112, dsalt@purdue.edu

Ag Communications: (765) 494-2722;
Keith Robinson, robins89@purdue.edu
Agriculture News Page

 

ABSTRACT

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana is
Driven by Natural Variation of the Sodium Transporter AtHTK1;1

Ivan Baxter, Jessica N. Brazelton, Danni Yu, Yu S. Huang, Brett Lahner,
Elena Yakubova, Yan Li, Joy Bergelson, Justin O. Borevitz,
Magnus Nordborg, Olga Vitek, David E. Salt

The genetic model plant Arabidopsis thaliana, like many plant species, experiences a range of edaphic conditions across its natural habitat. Such heterogeneity may drive local adaptation, though the molecular genetic basis remains elusive. Here, we describe a study in which we used genome-wide association mapping, genetic complementation, and gene expression studies to identify cis-regulatory expression level polymorphisms at the AtHKT1;1 locus, encoding a known sodium (Na+) transporter, as being a major factor controlling natural variation in leaf Na+ accumulation capacity across the global A. thaliana population. A weak allele of AtHKT1;1 that drives elevated leaf Na+ in this population has been previously linked to elevated salinity tolerance. Inspection of the geographical distribution of this allele revealed its significant enrichment in populations associated with the coast and saline soils in Europe. The fixation of this weak AtHKT1;1 allele in these populations is genetic evidence supporting local adaptation to these potentially saline impacted environments.