{"id":13,"date":"2014-03-31T17:27:24","date_gmt":"2014-03-31T17:27:24","guid":{"rendered":"http:\/\/web.ics.purdue.edu\/~dewoody\/DeWoody\/wordpress\/?page_id=13"},"modified":"2026-03-16T16:29:20","modified_gmt":"2026-03-16T16:29:20","slug":"publications","status":"publish","type":"page","link":"https:\/\/www.purdue.edu\/fnr\/sites\/dewoody\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"

If you’d like to see these papers in reverse chronological order, see my Google Scholar Profile<\/a>. If you’d like a reprint of a paper, please email me at <\/strong>dewoody@purdue.edu<\/strong><\/a> and if possible I\u2019ll send you an electronic version.<\/strong><\/p>\n

BOOKS<\/strong><\/p>\n

\n

\"Molecular<\/a><\/p>\n<\/div>\n

J.A DeWoody, J.W. Bickham, C. Michler, K. Nichols, O.E. Rhodes, and K. Woeste (eds.) Molecular approaches in natural resource conservation. <\/em>(2010) Cambridge University Press, 392 pp. ISBN 978-0-521-51564-1 Hardback. For more info, click for book details<\/a> .<\/p>\n

OTHER PEER-REVIEWED PUBLICATIONS<\/strong><\/p>\n

(journal articles & book chapters)<\/strong><\/p>\n

DeWoody J.A., Honeycutt R.L. & Skow L.C. (1995) Microsatellite markers in white-tailed deer. Journal of Heredity<\/b> <\/i>86:317-319.<\/p>\n

Cathey J.C., Smith L.M., Baker R.J. & DeWoody J.A. (1996) Trinucleotide repeat polymorphism at the alpha-enolase\/taucrystallin locus in ducks. Animal Genetics <\/b>27:130-131.<\/p>\n

Cathey J.C., Schmidt C.A. & DeWoody J.A. (1997) Incorporation of bromophenol blue enhances visibility of polyacrylamide gels. Biotechniques<\/b> 22:222.<\/i><\/p>\n

Cathey J.C., DeWoody J.A. & Smith L.M. (1998) Microsatellite markers in Canada geese (Branta canadenensis<\/i>). Journal of Heredity<\/b> <\/i>89:173-175.<\/i><\/p>\n

DeWoody J.A., Fletcher D., Wilkins, S.D., Nelson W. & Avise J.C. (1998) Molecular genetic dissection of spawning, parentage, and reproductive tactics in a population of redbreast sunfish, Lepomis auritus<\/i>. Evolution<\/b> 52:1802-1810.<\/p>\n

DeWoody J.A. (1999) Nucleotide variation in the p53<\/i> tumor-suppressor gene of voles from Chernobyl, Ukraine. Mutation Research<\/b> <\/i>439:25-36.<\/p>\n

DeWoody J.A., Chesser R.K. & Baker R.J. (1999) A translocated cytochrome b <\/i>pseudogene in voles (Rodentia: Microtus<\/i>) from Chernobyl, Ukraine. Journal of Molecular Evolution<\/b> <\/i>48:380-382.<\/b><\/p>\n

Baker R.J., DeWoody J.A., Wright A.J. & Chesser R.K. (1999) On the utility of heteroplasmy in genotoxic studies:  an example from Chernobyl. Ecotoxicology <\/b>8:301-309.<\/i><\/p>\n

Chesser R.K., Sugg D.W., Lomakin M.D., Van Den Bussche R.A., DeWoody J.A., Jagoe C.H., Dallas C.E., Whicker W., Smith M.H., Gaschak S.P., Chizhevsky I.V., Lyabik V.V., Buntova E.G., Holloman K. & Baker R.J. (2000)  Concentrations and dose rate estimates of 134,137<\/sup><\/i>Cesium and 90<\/sup><\/i>strontium  in small mammals at Chornobyl, Ukraine. Environmental Toxicology and Chemistry<\/b> <\/i>19:305-312.<\/p>\n

DeWoody J.A. & Avise J.C. (2000) Microsatellite variation in animal populations, with special emphasis on marine, freshwater, and anadromous fishes. Journal of Fish Biology <\/b>56:461-473.<\/p>\n

DeWoody J.A., DeWoody Y.D., Fiumera A. & Avise J.C. (2000) On the number of reproductives contributing to a half-sib progeny array. Genetical Research <\/b>(Cambridge) <\/b>75:95-105.<\/p>\n

DeWoody J.A., Walker D., & Avise J.C. (2000) Genetic parentage in large half-sib clutches: theoretical estimates and empirical appraisals. Genetics<\/b> <\/i>154:1907-1912.<\/p>\n

DeWoody J.A., Fletcher D.E., Wilkins S.D. & Avise J.C. (2000) Microsatellite analyses of parentage and nest guarding in the tessellated darter (Pisces: Percidae). Copeia <\/b>2000:740-747.<\/i><\/p>\n

DeWoody J.A., Fletcher D., Wilkins S.D., Mackiewicz M. & Avise J.C. (2000) The genetic mating system of the spotted sunfish (Lepomis punctatus<\/i>): mate numbers and the influence of male reproductive parasites. Molecular Ecology<\/b> <\/i>9:2119-2128.<\/p>\n

DeWoody J.A., Fletcher D., Wilkins S.D., Nelson, W. & Avise J.C. (2000) Biparental care and genetic monogamy in an externally-fertilizing fish, the largemouth bass (Micropterus salmoides<\/i>). Proceedings of the Royal Society <\/b>B267:2431-2437.<\/p>\n

Fiumera A.C, DeWoody Y.D., DeWoody J.A., Asmussen M.A. & Avise J.C. (2001) Accuracy and precision of methods to estimate the numbers of parents contributing to a half-sib progeny array. Journal of Heredity<\/b> 92:120-126. Invited contribution.<\/i><\/p>\n

DeWoody J.A. & Avise J.C. (2001) Genetic perspectives on the natural history of fish mating systems. Journal of Heredity<\/b> 92:167-172.  Invited review paper.<\/i><\/p>\n

DeWoody J.A., Fletcher D.E., Wilkins S.D. & Avise J.C. (2001) Genetic documentation of filial cannibalism. Proceedings of the National Academy of Sciences (PNAS) USA<\/b> 98:5090-5092.<\/p>\n

Mackiewicz, M., Fletcher D.E., Wilkins S.D., DeWoody J.A. & Avise J.C. (2002) A genetic assessment of parentage in a natural population of dollar sunfish (Lepomis marginatus<\/i>) based on microsatellite markers. Molecular Ecology<\/b>11:1877-1883.<\/p>\n

Avise J.C., Jones A.G., Walker D. & DeWoody J.A. (2002) Microsatellite profiles of the genetic mating systems and reproductive natural histories of fishes. Annual Review of Genetics<\/b> 36:19-45.<\/i><\/p>\n

Fiumera A.C., DeWoody J.A., Asmussen M.A. & Avise J.C. (2002) Estimating the proportion of offspring attributable to candidate adults. Evolutionary Ecology<\/b>16:549-565.<\/i><\/p>\n

Glaubitz J.C., Rhodes O.E. & DeWoody J.A. (2003) Prospects for inferring pairwise relationships with single nucleotide polymorphisms (SNPs). Molecular Ecology<\/b>12:1039-1048.<\/p>\n

Belfiore T., Hoffman F.G., Baker R.J. & DeWoody J.A. (2003) The use of nuclear and mitochondrial single nucleotide polymorphisms (SNPs) to identify cryptic species. Molecular Ecology<\/b> <\/i>12:2011-2017.<\/p>\n

Williams R.N. & DeWoody J.A. (2004) Fluorescent dUTP helps characterize ten novel tetranucleotide microsatellites from an enriched salamander (Ambystoma texanum<\/i>) genomic library. Molecular Ecology Notes<\/b> <\/i>4:17-19.<\/i><\/p>\n

Howard R.D., DeWoody J.A. & Muir W. (2004) Alternative mating tactics may halt a Trojan gene despite transgenic mating advantage. Proceedings of the NationalAcademy of Sciences (PNAS) USA<\/b> <\/i>101:2934-2938.<\/p>\n

DeWoody J.A., Schupp J., Kenefic L., Busch J., Murfitt L. & Keim P. (2004) A universal method for producing ROX-labeled size standards suitable for automated genotyping.  Biotechniques<\/b> 37:348-352.<\/p>\n

DeWoody Y.D. & DeWoody J.A. (2005) On the estimation of genome-wide heterozygosity using molecular markers. Journal of Heredity<\/b> 96:85-88.<\/i><\/p>\n

Rudnick J.A., Katzner T.E., Bragin E.A., Rhodes O.E. & DeWoody J.A. (2005) Using naturally shed feathers for individual identification, genetic parentage analyses, and population monitoring in an endangered Eastern imperial eagle (Aquila heliaca<\/i>) population from Kazakhstan. Molecular Ecology <\/b>14:2959-2967.<\/i><\/p>\n

Bos D.H. & DeWoody J.A. (2005) Molecular characterization of major histocompatibility complex class II alleles in wild tiger salamanders (Ambystoma tigrinum<\/i>). Immunogenetics <\/b>57:775-781.<\/i><\/p>\n

DeWoody J.A. (2005) Molecular approaches to the study of parentage, relatedness and fitness: practical applications for wild animals. Journal of Wildlife Management<\/b> 69:1400-1418.  Invited review paper.<\/i><\/p>\n

Gopurenko, D., Williams R.N., McCormick C. & DeWoody J.A. (2006) Insights into the aggregate breeding biology of the tiger salamander (Ambystoma tigrinum<\/i>) as revealed by genetic parentage analyses. Molecular Ecology <\/b>15:1917-1928.<\/p>\n

Waser, P.M., Busch J., McCormick C.R. & DeWoody J.A. (2006) Parentage analysis detects cryptic pre-capture dispersal in a philopatric rodent. Molecular Ecology<\/b>15:1929-1937.<\/i><\/p>\n

Triant D.A. & DeWoody J.A. (2006) Accelerated molecular evolution in Microtus<\/i>(Rodentia) as assessed via complete mitochondrial genome sequences. Genetica<\/b>128:95-108.<\/i><\/p>\n

Waser, P.M. & DeWoody J.A. (2006) Multiple paternity in a philopatric rodent:  the interaction of competition and choice.  Behavioral Ecology <\/b>17:971-978.<\/i><\/p>\n

Busch J.D., Waser P.M. & DeWoody J.A. (2007) Recent demographic bottlenecks are not accompanied by a genetic signature in two populations of banner-tailed kangaroo rats (Dipodomys spectabilis<\/i>).  Molecular Ecology<\/b> 16:2450-2462.<\/i><\/p>\n

Triant D.A. & DeWoody J.A. (2007) The occurrence, detection, and avoidance of mitochondrial DNA translocations in mammalian systematics and phylogeography.  Journal of Mammalogy <\/b>88:908-920.<\/i><\/p>\n

Rudnick J.A., Katzner T.E., Bragin E.A. & DeWoody J.A. (2007) Species identification of birds through genetic analysis of naturally shed feathers.  <\/i>Molecular Ecology Notes <\/b>7:757-762.<\/p>\n

Triant D.A. & DeWoody J.A. (2007) Extensive numt transfer <\/i>in a rapidly evolving rodent has been mediated by independent insertion events and by duplications. Gene<\/b> 401:61-70.<\/p>\n

Bos D.H., Turner S.M. & DeWoody J.A. (2007) Haplotype inference from diploid sequence data: evaluating the performance of Bayesian methods using non-neutral MHC sequences.  Hereditas<\/b> 144:228-234.<\/p>\n

Turner S.M., Faisal M. & DeWoody J.A. (2007) Major histocompatibility complex (MHC) genotype predicts susceptibility to Renibacterium salmoninarum <\/i>in Atlantic salmon (Salmo salar<\/i> L.).  Animal Genetics <\/b>38:517-519.<\/i><\/p>\n

Gopurenko D., Williams R.N. & DeWoody J.A. (2007) Reproductive and mating success in the small-mouthed salamander (Ambystoma texanum<\/i>) estimated via microsatellite parentage analysis.  Evolutionary Biology <\/b>34:130-139.<\/i><\/p>\n

Triant D.A. & DeWoody J.A. (2008) Molecular analyses of mitochondrial pseudogenes within the nuclear genome of arvicoline rodents.  Genetica<\/b> 132:21-33.<\/p>\n

Rudnick J.A., Katzner T.E., Bragin E.A. & DeWoody J.A. (2008) A noninvasive genetic evaluation of population size, philopatry, and communal roosting behavior of non-breeding imperial eagles (Aquila heliaca<\/i>).  Conservation Genetics <\/b>9:667-676.<\/i><\/p>\n

Glista D.J., DeVault T.L & DeWoody J.A. (2008) Vertebrate road mortality and its impact on amphibians.  Herpetological Conservation and Biology <\/b>3:77-87.<\/i><\/p>\n

Bos D.H., Gopurenko D., Williams R.N. & DeWoody J.A. (2008) Inferring population history and demography using microsatellites, mitochondrial DNA, and major histocompatibility complex (MHC) genes.  Evolution<\/b> 62:1458-1468.<\/i><\/p>\n

Chaves-Campos, J. & DeWoody J.A. (2008) The spatial distribution of avian relatives:  do obligate army-ant-following birds roost and feed near family members?  Molecular Ecology <\/b>17:2963-2974.<\/i><\/p>\n

Bulut, Z., McCormick C.R., Bos D.H. & DeWoody J.A. (2008) Polymorphism for alternative splicing of major histocompatibility complex (MHC) transcripts in wild tiger salamanders.  Journal of Molecular Evolution<\/b> 67:68-75.<\/i><\/p>\n

Williams R.N., Bos D.H., Gopurenko D. & DeWoody J.A. (2008) Amphibian malformations and inbreeding.  Biology Letters<\/b> 4:549-552.<\/p>\n

Busch J.D., Waser P.M. & DeWoody J.A. (2008) Characterization of expressed class II MHC loci in the banner-tailed kangaroo rat (Dipodomys spectabilis<\/i>) reveals multiple DRB loci.  Immunogenetics <\/b>60:677-688.<\/i><\/p>\n

McCormick, C.R., Bos D.H. & DeWoody J.A. (2008)  Multiple molecular approaches yield no evidence for sex-determining genes in lake sturgeon (Acipenser fulvescens<\/i>).  Journal of Applied Ichthyology <\/b>24:643-645.<\/p>\n

DeVault T., Glista D. & DeWoody J.A. (2009) A review of mitigation measures for reducing wildlife mortality on roadways.  Landscape and Urban Planning <\/b>91:1-7.<\/i><\/p>\n

Triant D.A. & DeWoody J.A. (2009) Integrating numt<\/i> pseudogenes into mitochondrial phylogenies: comment on Mitochondrial phylogeny of Arvicolinae using comprehensive taxonomic sampling yields new insights<\/em>.  Biological Journal of the Linnean Society <\/b>97:223-224.<\/p>\n

Hale M.C., McCormick C.R., Jackson J.R. & DeWoody J.A. (2009) Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens<\/i>):  the relative merits of normalization and rarefaction in gene discovery.  BMC Genomics <\/b>10:203.  Designated a<\/i> Highly Accessed paper by the journal, indicating this paper has been especially highly accessed relative to its age<\/i><\/p>\n

Williams R.N. & DeWoody J.A. (2009) Reproductive success and sexual selection in wild tiger salamanders (Ambystoma tigrinum tigrinum<\/i>).  Evolutionary Biology <\/b>36:201-213.<\/i><\/p>\n

Bulut Z., McCormick C.R., Gopurenko D., Williams R.N., Bos D.H. & DeWoody J.A. (2009) Microsatellite mutation rates in the eastern tiger salamander (Ambystoma tigrinum tigrinum<\/i>) differ 10-fold across loci.  Genetica <\/b>136:501-504.<\/i><\/p>\n

Triant D.A. & DeWoody J.A. (2009) Demography and phylogenetic utility of numt pseudogenes in the southern red-backed vole (Myodes gapperi<\/i>).  Journal of Mammalogy <\/b>90:561-570.<\/p>\n

Rudnick J.A., Miller A., Lacy R.C. & DeWoody J.A. (2009) Methods and prospects for using molecular data in the genetic management of populations:  an empirical example using parma wallabies (Macropus parma<\/i>).  Journal of Heredity <\/b>100:441-454.<\/i><\/p>\n

Turner S.M., Chaves-Campos J. & DeWoody J.A. (2009) Parental relatedness and major histocompatibility effects on early embryo survivorship in Atlantic salmon (Salmo salar<\/i>).  Genetica <\/b>137:99-109.<\/i><\/p>\n

Bos D.H., Gopurenko D., Williams R.N., Bulut Z. & DeWoody J.A. (2009) Condition-dependant mate choice and a reproductive disadvantage for MHC-divergent tiger salamanders. Molecular Ecology<\/b> 18:3307-3315.  Highlighted by an accompanying News and Views Perspective article in Molecular Ecology; recommended reading by the Faculty of 1000.<\/i><\/p>\n

Busch J.D., Waser P.M. & DeWoody J.A. (2009) The influence of density and sex on patterns of fine-scale genetic structure.  Evolution <\/b>63:2302-2314.<\/p>\n

Williams R.N., Kemp K., Williams B. & DeWoody J.A. (2009) Breeding chronology, sexual dimorphism, and genetic diversity of congeneric Ambystomatid salamanders.  Journal of Herpetology<\/b> 43: 438-449.<\/p>\n

Araya-Ajoy Y., Chaves-Campos J., Kalko E.K.V. & DeWoody J.A. (2009) High-pitched notes during vocal contests signal genetic diversity in ocellated antbirds. PLoS ONE<\/b> 4(12): e8137. doi:10.1371\/journal.pone.0008137<\/p>\n

Cooper J.D., Waser P.M., Vitalis R., Gopurenko D., Hellgren E.C., Gabor T.M. & DeWoody J.A. (2010) Quantifying male-biased dispersal among social groups in the collared peccary (Pecari tajacu<\/i>) using analyses based on mtDNA variation. Heredity <\/b>104:79-87.<\/i><\/p>\n

Hale M.C., Jackson J.R. & DeWoody J.A. (2010) Discovery and evaluation of candidate sex-determining genes and xenobiotics in the gonads of lake sturgeon (Acipenser fulvescens<\/i>).  Genetica <\/b>138:745-756. DOI: 10.1007\/s10709-010-9455-y<\/p>\n

Eo S.H. & DeWoody J.A. (2010) Evolutionary rates of mitochondrial genomes correspond to diversification rates and to contemporary species richness in birds and reptiles.  Proceedings of the Royal Society <\/b>277:3587-3592.<\/i><\/p>\n

Cooper J.D., Waser P., Gopurenko D., Hellgren E., Gabor T. & DeWoody J.A. (2010) Measuring sex-biased dispersal in social mammals: comparisons of nuclear and mitochondrial genes in collared peccaries.  Journal of Mammalogy <\/b>91:1413-1424.<\/i><\/p>\n

Doyle J.M., McCormick C.R. & DeWoody J.A. (2011) The quantification of spermatozoa by real-time quantitative PCR, spectrophotometry, and spermatophore cap size. <\/i>Molecular Ecology Resources<\/b> 11:101-106.<\/i><\/p>\n

DeWoody J.A. (2011) Transformational discoveries and paradigm shifts in evolutionary biology.  Review of Remarkable Creatures: Epic Adventures in the Search for the Origin of Species<\/em> by Sean B. Carroll.  BioScience <\/b>61:154-155. Invited review.<\/i><\/p>\n

Eo S.H., Doyle J.M. & DeWoody J.A. (2011) Genetic diversity in birds is associated with body mass and habitat type.  Journal of Zoology <\/b>283:220-226.<\/i><\/p>\n

Cooper J.D, Waser P.M., Hellgren E.C., Gabor T.M. & DeWoody J.A. (2011) Is sexual monomorphism a predictor of polygynandry?  Evidence from a social mammal, the collared peccary (Pecari tajacu<\/i>).  Behavioral Ecology and Sociobiology<\/b>65:775-785<\/p>\n

Katzner T.E., Ivy J.A., Bragin E.A., Milner-Gulland E.J. & DeWoody J.A. (2011) Conservation implications of inaccurate estimation of cryptic population size.  Animal Conservation <\/b>14:328-332 Feature Article, highlighted on journal cover with three accompanying Commentary articles.<\/i><\/p>\n

Katzner T.E., Ivy J.A., Bragin E.A., Milner-Gulland E.J. & DeWoody J.A. (2011) Cryptic population size and conservation: consequences of making the unknown known.  Animal Conservation<\/strong> 14:340-341. Response to three Commentaries on our Feature Article.<\/em><\/p>\n

McCreight J., DeWoody J.A & Waser P.M. (2011) DNA from copulatory plugs provides insights into sexual selection. Journal of Zoology<\/strong> 284:300-304<\/p>\n

Eo S.H., Doyle J.M., Hale M.C., Marra N.J., Ruhl J.D. & DeWoody J.A. (2012) Comparative transcriptomics and gene expression in larval tiger salamander (Ambystoma tigrinum<\/em>) gill and lung tissues as revealed by pyrosequencing. Gene <\/strong>492:329-38.
\n<\/strong><\/p>\n

Katzner T.E., Wheeler M., Negro J.J., Kapetanakos Y., DeWoody J.A., Horvath M. & Lovette I. (2012) To pluck or not to pluck: scientific methodologies should be carefully chosen, not one size fits all. Journal of Avian Biology<\/strong> 43:1-3.<\/p>\n

Campomizzi, A. J., M. L. Morrison, J. A. DeWoody, S. L. Farrell & R.N. Wilkins. (2012) Win-stay, lose-switch and public information strategies for patch fidelity of songbirds with rare extra-pair paternity. Scientific Reports<\/strong> 2:294 | DOI: 10.1038\/srep00294.<\/p>\n

Fahey A.L., Ricklefs R.E., Latta S. & DeWoody J.A. (2012) Comparative historical demography of migratory and nonmigratory birds from the Carribean island of Hispaniola. Evolutionary Biology<\/strong> 39:400-414<\/p>\n

Eo, S.H. & DeWoody J.A. (2012) The effects of contig length and depth on the estimation of SNP frequencies, and the relative abundance of SNPs in protein-coding and non-coding transcripts. BMC Genomics<\/strong> 13:259 DOI:10.1186\/1471-2164-13-259. Designated a Highly Accessed paper by the journal, indicating this paper has been especially highly accessed relative to its age<\/em>.<\/p>\n

Marra N.J., Eo S.H., Hale M.C., Waser P.M., & DeWoody J.A. (2012) A priori<\/em> and aposteriori<\/em> approaches for finding genes of evolutionary interest in non-model species: osmoregulatory genes in the kidney transcriptome of the desert rodentDipodomys spectabilis<\/i> (banner-tailed kangaroo rat). Comparative Biochemistry and Physiology Part D<\/strong> 2012:328-339.<\/p>\n

DeWoody J.A., Abts K.C., Fahey A.L., Ji Y., Kimble S.J., Marra N.J., Wijayawardena B.K. & Willoughby J.R. (2013) Of contigs and quagmires: next-gen sequencing pitfalls associated with transcriptomic studies. Molecular Ecology Resources<\/strong>13:551-558.<\/p>\n

Wijayawardena B., Minchella D.J. & DeWoody J.A. (2013) Hosts, parasites, and horizontal gene transfer.  Trends in Parasitology <\/b>29:329-338.  In March 2014, this paper was voted a Top 10 article of 2013 by the journal Editorial Board.<\/i><\/p>\n

Doyle J.M., Siegmund G., Ruhl J.D., Eo S.H., Hale M.C., Marra N.J., Waser P.M. & DeWoody J.A. (2013) Microsatellite analyses across three diverse vertebrate transcriptomes (Acipenser fulvescens, Ambystoma tigrinum, <\/i>and Dipodomys spectabilis<\/i>). Genome <\/b>56:407-414.<\/p>\n

Katzner T.E., Jackson D.S., Ivy J., Bragin E.A. & DeWoody J.A. (2014) Variation in offspring sex ratio of a sexually dimorphic, long-lived raptor, the Eastern Imperial Eagle. Ibis<\/b> 156: 395-403.<\/i><\/p>\n

Doyle J.M., Katzner T.E., Bloom P.H., Ji Y., Wijayawardena B.K. & DeWoody J.A. (2014) The genome sequence of a widespread apex predator, the Golden Eagle (Aquila chrysaetos<\/i>).  PLoS ONE <\/b>9(4): e95599.  DOI: 10.1371\/journal.pone.0095599.<\/i><\/p>\n

Fahey A.L., Ricklefs R.E. & DeWoody J.A. (2014) DNA-based approaches for evaluating historical demography in terrestrial vertebrates.  Biological Journal of the Linnean Society <\/b>112:367\u2013386.<\/i><\/p>\n

Marra N.J., Romero A. & DeWoody J.A. (2014) Natural selection and the genetic basis of osmoregulation in Heteromyid rodents as revealed by RNA-seq. Molecular Ecology <\/b>23:2699\u20132711.<\/i><\/p>\n

Nowakowski A.J., Willoughby J.R., DeWoody J.A. & Donnelly M.A. (2014) Polymorphic microsatellite loci for a neotropical leaf-litter frog (Craugastor bransfordii<\/i>) characterized through Illumina sequencing. Conservation Genetics Resources <\/b>10.1007\/s12686-014-0185-9.<\/i><\/p>\n

DeWoody J.A. (2014) Heirloom genomes and bison conservation. Science <\/strong>345:1009.<\/em><\/p>\n

Marra N.J. & DeWoody J.A. (2014) Transcriptomic characterization of the immunogenetic repertoires of heteromyid rodents. BMC Genomics<\/strong> 15:929 | DOI:10.1186\/1471-2164-15-929.<\/p>\n

Willoughby J.R., Fernandez N.B., Lamb M.C., Ivy J., Lacy R. & DeWoody J.A. (2015) The impacts of inbreeding, drift, and selection on genetic diversity in captive breeding populations. Molecular Ecology<\/strong> 24:98-110.<\/em><\/p>\n

Nowakowski A.J., DeWoody J.A., Fagan M.E., Willoughby J.R. & Donnelly M.A. (2015) Mechanistic insights into landscape genetic structure of two tropical amphibians using field-derived resistance surfaces. Molecular Ecology <\/strong>24:580-595.<\/em><\/p>\n

Abts K.C., Ivy J. & DeWoody J.A. (2015) Immunomics of the koala (Phascolarctos cinereus<\/em>). Immunogenetics <\/strong>67:305-321.<\/em><\/p>\n

Wijayawardena B., DeWoody J.A. & Minchella D.J. (2015) The genomic proliferation of transposable elements is facilitated by the invasion of new habitats:  Schistosoma mansoni<\/em> in the new world. Genetica<\/strong> 143:287-298.<\/em><\/p>\n

Tracy K.E., Kiemnec-Tyburczy K.M., DeWoody J.A., Parra-Olea G. & Zamudio K.R. (2015) Positive selection drives the evolution of a major histocompatibility complex gene in an endangered Mexican salamander species complex. Immunogenetics <\/strong>67:323-335.<\/em><\/p>\n

Ji Y., Marra N.M. & DeWoody J.A. (2015) Comparative analysis of active retrotransposons in the transcriptomes of three species of Heteromyid rodents. Gene <\/strong>562:95-106.<\/em><\/p>\n

Doyle J.M., Hacking C.C, Willoughby J.R., Sundaram M. & DeWoody J.A. (2015) Mammalian genetic diversity as a function of habitat, body size, trophic class, and conservation status. Journal of Mammalogy<\/strong> 96:564-572.
\n<\/em><\/p>\n

Wijayawardena B., Minchella D.J. & DeWoody J.A. (2015) Horizontal gene transfer in schistosomes: a critical assessment. Molecular & Biochemical Parasitology <\/strong>201:57-65.<\/em><\/p>\n

Fahey A.L., Ricklefs R.E. & DeWoody J.A. (2015) Historical demography of bird populations from Hispaniola assessed by nuclear and mitochondrial gene sequences. Folia Zoologica <\/strong>64:259-272. Invited paper.<\/em><\/p>\n

Willoughby J.R., Sundaram M., Wijayawardena B.K., Lamb M.C., Kimble S.J.A., Ji Y., Fernandez N.B., Antonides J.D., Marra N.J. & DeWoody J.A. (2015) The reduction of genetic diversity in threatened vertebrates and new recommendations regarding effective population size and IUCN conservation rankings. Biological Conservation <\/strong>191:495-503.<\/em><\/p>\n

Swihart R.K., Sundaram M., Hook T.O. & DeWoody J.A. (2016) Factors affecting scholarly performance by wildlife and fisheries faculty. Journal of Wildlife Management<\/strong> 80: 563\u2013572.<\/em><\/p>\n

Swihart R.K., Sundaram M., Hook T.O., Kellner K.F. & DeWoody J.A. (2016) Performance benchmarks for scholarly metrics associated with fisheries and wildlife faculty. PLoS ONE<\/strong> 11(5): e0155097.   <\/em><\/p>\n

Willoughby J.R., Wijayawardena B.K., Sundaram M., Swihart R.K & DeWoody J.A. (2016) The importance of including imperfect detection models in eDNA experimental design. Molecular Ecology Resources<\/strong> 16:837-844.<\/p>\n

Ji Y. & DeWoody J.A. (2016) Genomic landscape of long terminal repeat retrotransposons (LTR-RTs) and solo LTRs as shaped by ectopic recombination in chicken and zebra finch. Journal of Molecular Evolution <\/strong>82:251-263.<\/em><\/p>\n

Abdel Moniem H.M., Schemerhorn B.J., DeWoody J.A. & Holland J.D. (2016) Landscape genetics of a pollinator longhorn beetle [Typocerus v. velutinus<\/em>(Olivier)] on a continuous habitat surface. Molecular Ecology <\/strong>25:5015-5028.<\/em><\/p>\n

Wijayawardena B.K, Minchella D.J. & DeWoody J.A. (2016) The influence of trematode parasite burden on gene expression in a mammalian host. BMC Genomics <\/strong>17:600 DOI: 10.1186\/s12864-016-2950-5.<\/p>\n

Doyle J.M., Katzner T.E., Roemer G.W., Cain III J.W., Milsap B., McIntire C., Sonsthagen S., Fernandez N., Wheeler M., Bulut Z., Bloom P. & DeWoody J.A. (2016) Novel single nucleotide polymorphisms reveal genetic structure and viability selection in the Golden Eagle (Aquila chrysaetos<\/em>), a vagile raptor with a holarctic distribution. Conservation Genetics<\/strong> 17:1307-1322. DOI: 10.1007\/s10592-016-0863-0.<\/em><\/p>\n

DeWoody J.A. (2016) The tangled bank, ecology, and Gordian knots. BioScience<\/strong> 66:1079-1080.<\/p>\n

Bulut Z., Bragin E., DeWoody J.A., Braham M., Katzner T.E., & Doyle J.M. (2016) Raptor space use and philopatry as assessed using non-invasive genetic methods: eagles on the Asian steppe. <\/em>Journal of Raptor Research <\/strong>50:351-362.<\/em><\/p>\n

Katzner T.E., Nelson D., Braham M., Doyle J.M., Fernandez N., Duerr A.E., Bloom P., Miller T. & DeWoody J.A. (2017). Golden eagle fatalities and the continental-scale consequences of local wind-energy generation. Conservation Biology <\/strong>31: 406-415. DOI: 10.1111\/cobi.12836.<\/p>\n

Antonides J., Ricklefs R.E. & DeWoody J.A. (2017) The genome sequence and insights into the immunogenetics of the bananaquit (Passeriformes: Coereba flaveola<\/em>). Immunogenetics <\/strong>69:175-186. <\/em>DOI:10.1007\/s00251-016-0960-8<\/p>\n

Ji Y. & DeWoody J.A. (2017) Relationships among powered flight, metabolic rate, body mass, genome size, and the retrotransposon complement of volant birds. Evolutionary Biology <\/strong>44:261-272. <\/em>DOI:10.1007\/s11692-016-9405-4.<\/em><\/p>\n

Willoughby J.R., Sundaram M., Wijayawardena B.K., Lamb M.C., Kimble S.J.A., Ji Y., Fernandez N.B., Antonides J.D., Marra N.J. & DeWoody J.A. (2017) Biome and migratory behavior significantly influence vertebrate genetic diversity. Biological Journal of the Linnean Society <\/strong>121:446\u2013457.<\/em><\/p>\n

Feiner Z.S., DeWoody J.A., Breck J.E. & Hook T.O. (2017) Multilocus heterozygosity interacts with environment to influence early life size. Ecology and Evolution <\/strong>2017:1-13. DOI: 10.1002\/ece3.2781<\/p>\n

Willoughby J.R., Ivy J.A., Lacy R.C., Doyle J.M. & DeWoody J.A. (2017) Inbreeding and selection shape genomic diversity in captive populations: implications for the conservation of endangered species. PLoS ONE<\/strong> DOI: 10.1371\/journal.pone.0175996<\/p>\n

DeWoody J.A., Fernandez N.B., Br\u00fcniche-Olsen A., Antonides J.D., Doyle J.M., San Miguel P., Westerman R., Vertankin V., Codard-Codding C. & Bickham J.W. (2017) Characterization of the gray whale (Eschrichtius robustus<\/em>) genome and a genotyping array based on single nucleotide polymorphisms in candidate genes. Biological Bulletin<\/strong> 232:186-197.<\/em><\/p>\n

Katzner T., Driscoll D., Jackman R., Bloom P., Thomas S., Cooper J., Living S., Grubb T., Doyle J., Bell D., J. Didonato & DeWoody J.A. (2018) Non-anthropogenic diet-based oiling of predatory birds. Journal of Raptor Research <\/strong>52:82-88.
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Leroy G., Carroll E.L., Bruford M., DeWoody J.A., Strand A., Waits L., & Wang J. (2018) Next-generation metrics for monitoring genetic erosion within populations of conservation concern. Evolutionary Applications <\/strong>11:1066-1083.<\/em> Invited paper<\/em>. Special issue on \u201cNext generation conservation genetics and biodiversity monitoring\u201d<\/p>\n

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Carroll E.L., Bruford M., DeWoody J.A., Leroy G., Strand A., Waits L., & Wang J. (2018) Genetic and genomic monitoring with minimally invasive sampling methods. Evolutionary Applications <\/strong>11:1094-1119. Invited paper<\/em>. Special issue on \u201cNext generation conservation genetics and biodiversity monitoring\u201d<\/p>\n

Doyle J.M., Bell D.A., Bloom P.H., Emmons G., Fesnock A., Katzner T.E., LaPre L., Leonard K., San Miguel P., Westerman R. & DeWoody J.A. (2018) New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus<\/em>).  BMC Genomics<\/strong> 19(1):233. doi: 10.1186\/s12864-018-4615-z.<\/span><\/p>\n

Br\u00fcniche-Olsen A., R. Urban, J., Vertyankin V.V., Godard-Codding C.A.J., Bickham J.W. & DeWoody J.A. (2018) Genetic data reveal mixed-stock aggregations of gray whales in the North Pacific Ocean. Biology Letters <\/strong>14: doi.org\/10.1098\/rsbl.2018.0399<\/a>.<\/em><\/p>\n

Br\u00fcniche-Olsen A., Kellner K.F., Anderson C.J. & DeWoody J.A. (2018) Runs of homozygosity have utility in mammalian conservation and evolutionary studies. Conservation Genetics<\/strong> 19:1295\u20131307.<\/p>\n

Abts K.C., Ivy J.A. & DeWoody J.A. (2018) Behavioral, environmental, and genetic determinants of mating success in captive koalas (Phascolarctos cinereus<\/em>).  Zoo Biology<\/strong> 37:416-433.<\/em><\/p>\n

Antonides J.D., Mathur S., Sundaram M., Ricklefs R.E. & DeWoody J.A. (2019) Immunogenetic response of the bananaquit (Coereba flaveola<\/em>) in the face of hemosporidian parasites.  BMC Evolutionary Biology<\/strong> 19:107.<\/p>\n

Romero A., Mort M.E., DeWoody J.A. & Timm R.M. (2019) Genetic relationships of Caribbean lowland spiny pocket mice (Heteromys desmarestianus<\/em>: Rodentia; Heteromyidae): evidence of a distinct mitochondrial lineage. Therya <\/strong>10:309-318.<\/em><\/p>\n

Doyle J.M., Willoughby J., Bell D.A., Bloom P.H., Bragin E.A., Fernandez N.B., Katzner T.E., Leonard K. & DeWoody J.A. (2019) Elevated heterozygosity in adults relative to juveniles provides evidence of viability selection in eagles and falcons.  Journal of Heredity <\/strong>110:696-706.<\/em><\/p>\n

Brykov V.A., Efimova K.V., Br\u00fcniche-Olsen A., DeWoody J.A. & Bickham J.W. (2019) Population structure of Sakhalin gray whales revealed by DNA sequences of four mtDNA genes. Population structure of Sakhalin gray whales (Eschrichtius robustus) revealed by DNA sequences of four mtDNA genes. Pp. 441\u2013454 in From field to laboratory: a memorial volume in honor of Robert J. Baker <\/strong>(R. D. Bradley, H. H. Genoways, D. J. Schmidly, and L. C. Bradley, eds.). Special Publications, Museum of Texas Tech University 71:xi+1\u2013911.<\/p>\n

DeWoody J.A. (2019) Robert J. Baker\u2014Encomium.  Pp. 886\u2013887 in From field to laboratory: a memorial volume in honor of Robert J. Baker <\/strong>(R. D. Bradley, H. H. Genoways, D. J. Schmidly, and L. C. Bradley, eds.). Special Publications, Museum of Texas Tech University 71:xi+1\u2013911.<\/p>\n

DeWoody J.A. & DeWoody Y.D. (2019) Our unexpected ride.  Science <\/strong>366:542.<\/em><\/p>\n

Mathur S., Tomecek J.M., Heniff A., Luna R. & DeWoody J.A. (2019) Evidence of genetic erosion in a peripheral population of a North American game bird: the Montezuma quail (Cyrtonyx montezumae<\/em>).  Conservation Genetics <\/strong>20:1369\u20131381.<\/em><\/p>\n

Br\u00fcniche-Olsen A., Kellner K.F. & DeWoody J.A. (2019) Body size, geographic range, and demographic history are key drivers of genomic diversity and inbreeding levels in Darwin\u2019s finches and related tanagers. Molecular Ecology <\/strong>28: 4914-4925.<\/em><\/p>\n

Antonides J.D., Mathur S. & DeWoody J.A. (2019) Episodic positive diversifying selection on key immune system genes in major avian lineages.  Genetica<\/strong> 147:337-350.<\/em><\/p>\n

Marsden E., Abbot R.J., Austerlitz F., Ortiz-Barrientos D., Baucom R.S., Bongaerts P., Bonin A., Bonneaud C., Browne L., Buerkle C.A., Caicedo A.L., Cruzan M.B., Davison A., DeWoody J.A. and 42 others. Sharing and reporting benefits from biodiversity research. (2020) Molecular Ecology <\/strong>30:1103-1107. DOI: 10.1111\/mec.15702<\/p>\n

Mathur S. & DeWoody J.A. (2021) Genetic load has potential in large populations but is realized in small inbred populations.  <\/em>Evolutionary Applications <\/strong>14:1540-1557. <\/em>https:\/\/doi.org\/10.1111\/eva.13216<\/em><\/a><\/p>\n

Br\u00fcniche-Olsen A., Bickham J.W., Godard-Codding C.A., Brykov V.A., Kellner K., Urban R.J. & DeWoody J.A. (2021) Influence of Holocene habitat availability and commercial whaling on Pacific gray whale (Eschrichtius robustus<\/em>) population dynamics as inferred from whole mitochondrial genome sequences and environmental niche modelling. <\/em>Journal of Mammalogy<\/strong> 102: 986-999.<\/em> https:\/\/doi.org\/10.1093\/jmammal\/gyab032<\/em><\/a><\/p>\n

Black A.N., Willoughby J.R., Br\u00fcniche-Olsen A., Pierce B.L. & DeWoody J.A. (2021) The endangered White Sands pupfish (Cyprinodon tularosa<\/em>) genome reveals low diversity and heterogenous patterns of differentiation.  Molecular Ecology Resources <\/strong>21:2520\u20132532. https:\/\/doi.org\/10.1111\/1755-0998.13447<\/a>
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DeWoody J.A., Harder H., Mathur S. & Willoughby J. (2021) The long-standing significance of genetic diversity in conservation. Molecular Ecology<\/strong>30:4147\u20134154. https:\/\/doi.org\/10.1111\/mec.16051<\/a>
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Br\u00fcniche-Olsen A., Kellner K.F., Belant J.L. & DeWoody J.A. (2021) Life-history traits and habitat availability shape genomic diversity in birds: implications for conservation.  Proceedings of the Royal Society<\/strong> https:\/\/doi.org\/10.1098\/rspb.2021.1441<\/em><\/a><\/p>\n

Bylsma R., Walkup D.K., Hibbits T.J., Ryberg W.A., Black A.N. & DeWoody J.A. (2022) Population genetic and genomic analyses of Western Massasauga (Sistrurus tergeminus ssp.<\/em>): implications for subspecies delimitation and conservation.  <\/em>Conservation Genetics<\/strong> 23:271-283. https:\/\/doi.org\/10.1007\/s10592-021-01420-8<\/a>
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Lamka G.F., Harder A.M., Sundaram M., Schwartz T., Christie M.R., DeWoody J.A. & Willoughby J.R. (2022) Epigenetics in ecology, evolution, and conservation. Frontiers in Ecology and Evolution<\/strong> 10:871791 https:\/\/doi.org\/10.3389\/fevo.2022.871791<\/em><\/a><\/p>\n

Mularo A.J., Bernal X.E. & DeWoody J.A. (2022) Dominance can increase genetic variance after a population bottleneck: a synthesis of the theoretical and empirical evidence. Journal of Heredity <\/strong>113:257-271. https:\/\/doi.org\/10.1093\/jhered\/esac007<\/em><\/a><\/p>\n

Commission on Novel Technologies for Neurodevelopmental Copy Number Variants<\/em> [Buttermore E.D., Chamberlain S.J., Codeey J.D., Costain G., Dang L.T., DeWoody J.A., DeWoody Y.D., Dies K.A., Eichler E.E., Girirajan S., Halladay A., Lal D., Lalli M.A., Levy T., Logsdon G.A., Lowenstein D.H., Mefford H.G., Mulle J.G., Muotri A.R., Murphy M.M., Pinter S.F., Pollak R.M., Purcell R.H., Samaco R.C., Shah B.M., Singh K.K., So, J., Sundberg M., Veeraragavan S., Vogel-Farley V., Wynshaw-Boris A.] (2022) Neurodevelopmental copy number variants: a roadmap to improving outcomes by uniting patient advocates, researchers, and clinicians for collective impact. American Journal of Human Genetics <\/strong>109:1353-1365. <\/em>https:\/\/authors.elsevier.com\/c\/1fXEK_4GsWG5p<\/em><\/a><\/p>\n

DeWoody J.A., Jeon J.Y., Bickham J.W., Heenkenda E., Janjua S., Lamka G.F., Mularo A., Black, A., Bru\u0308niche-Olsen A. & Willoughby J.R. (2022) The Threatened Species Imperative: Conservation assessments would benefit from population genomic insights. Proceedings of the National Academy of Sciences USA <\/strong>119 (35) e2210685119 https:\/\/www.pnas.org\/doi\/10.1073\/pnas.2210685119<\/em><\/a><\/p>\n

Ji Y., Feng S., Wu L., Fang Q., Br\u00fcniche-Olsen A., DeWoody J.A., Cheng Y., Zhang D., Hao Y., Song G., Qu Y., Suh A., Zhang G., Hackett S.J. & Lei F. (2022) Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds. Science Advances <\/strong>8(35) https:\/\/www.science.org\/doi\/10.1126\/sciadv.abo0099<\/em><\/a>.<\/em><\/p>\n

Mathur S., Tome\u010dek J.M., Tarango- Ar\u00e1mbula L.A., Perez R.M. & DeWoody J.A. (2023) An evolutionary perspective on genetic load in small, isolated populations as informed by whole genome resequencing and forward-time simulations. Evolution<\/strong> 77:690-704. https:\/\/doi.org\/10.1093\/evolut\/qpac061<\/a> [Dr. Samarth Mathur won the Society for the Study of Evolution’s 2023 President’s Award for Oustanding Dissertation Paper published in Evolution <\/strong>for this paper. In February 2025, this same paper also won the Outstanding Scientific Publication Award from the Texas Chapter of The Wildlife Society]<\/em><\/p>\n

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Black A.N., Bondo K.J., Mularo A., Hernandez A., Yu Y., Stein C.M., Gregory A., Fricke K.A., Prendergast J., Sullins D., Haukos D., Whitson M., Grisham B., Lowe Z.E. & DeWoody J.A. (2023) A highly contiguous and annotated genome assembly of the Lesser Prairie-Chicken (Tympanuchus pallidicinctus<\/em>). Genome Biology and Evolution <\/strong>15(4) evad043 https:\/\/academic.oup.com\/gbe\/article\/15\/4\/evad043\/7077021<\/em><\/a><\/p>\n

Mularo A.J., DeWoody J.A. & Bernal X.E. (2023) The establishment and occurrence history of three invasive anuran species across the Florida peninsula. Journal of Herpetology <\/em>57:381-389. https:\/\/bioone.org\/journals\/journal-of-herpetology\/volume-57\/issue-4\/23-002\/Establishment-and-Occurrence-History-of-Three-Invasive-Anuran-Species-Across\/10.1670\/23-002.short<\/a>
\n<\/em><\/p>\n

Heenkenda E., Fisher B., Albers G., & DeWoody J.A. (2024) A DNA-based evaluation of North American river otter diet with respect to fishes: implications for the conservation of aquatic predators and their prey. Aquatic Conservation<\/strong> 34:e4078<\/a>. <\/em><\/p>\n

Jeon J.Y., Shin Y., Mularo A.J., Feng X. & DeWoody J.A. (2024) Whole-genome resequencing meets ecological niche modeling to identify and conserve adaptive potential. Diversity and Distributions <\/strong>30(6):e13847<\/a> Review paper.<\/em><\/p>\n

Black A.N., Heenkenda E.J., Mathur S., Willoughby J.R., Pierce B.L., Turner S., Rizzuto D., DeWoody J.A. (2024) Cryptic and rapid speciation due to isolation and drift in an endangered pupfish. <\/em>Proceedings of the National Academy of Sciences (PNAS) USA <\/strong>121 (22) e2320040121<\/a><\/p>\n

Black A.N., Mularo A.J., Jeon J.Y., Haukos D., Bondo K.J., Fricke K.A., Gregory A., Grisham B., Lowe Z.E., & DeWoody J.A. (2024) Discordance between taxonomy and population genomic data: An avian example relevant to the United States Endangered Species Act. PNAS Nexus<\/strong> 3(8) 10.1093 https:\/\/academic.oup.com\/pnasnexus\/article\/3\/8\/pgae298\/7720645<\/em><\/a><\/p>\n

Jeon J.Y., Black A., Heenkenda E., Mularo A., Lamka G., Janjua S., Bruniche-Olsen A., Bickham J.W., Willoughby J. & DeWoody J.A. (2024) Genomic diversity as a key conservation criterion: proof-of-concept from mammalian whole-genome resequencing data. Evolutionary Applications <\/strong>17:e70000. Part of a Special Issue on Effective Population Size. https:\/\/onlinelibrary.wiley.com\/doi\/epdf\/10.1111\/eva.70000 <\/a>[Jong Yoon Jeon was awarded the 2024 Louis Bernatchez Memorial Prize for the best student-led paper in Evolutionary Applications<\/strong> for this manuscript.]
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Hoban S., Paz-Vina I., Shaw R.E., Castillo-Reina L., Da Silva J.M., DeWoody J.A., Ekblom R., Fedorca A., Forester B.R. Funk C.W., Geue J.C., Heuertz M., Hughes A.C., Hunter M.E., Hvilsom C., Ishihama F., Jordan R., Kalamujic Stroil B., Kershaw F., Khoury C.K., Koppa V., Laikre L., MacDonald A.J., Mastretta-Yanes A., Meek M.H., Mergeay J., Millette K.L., O\u2019Brien D., Rincon-Parra D., Rodriguez-Moralies M.A., Schuman M.C., Segelbacher G., Sunnucks P., Taylor R.S., Thurfjell H., Vernesi C. & Grueber C.E. (2024) DNA-based studies and genetic indicator assessments are complementary approaches to conserving evolutionary potential. Conservation Genetics<\/strong> https:\/\/doi.org\/10.1007\/s10592-024-01632-8<\/a>.<\/em><\/p>\n

Black A.N., Jeon Y.J., Mularo A.J., Allen N.M., Heenkenda E., Buchanan-Schwanke J.C., Bickham J.W., Lowe Z.E. & DeWoody J.A. (2024) Opinion: Thematic layers of genomic susceptibility for conservation monitoring. Molecular Ecology<\/strong> e17582. https:\/\/doi.org\/10.1111\/mec.17582<\/a>. Part of a Special Issue on Conservation Genomics.
\n<\/em><\/p>\n

Jeon Y.J., Allen N.M., Black A.N. & DeWoody J.A. (2025) Short-read pangenomes and their potential utility in population and conservation genomics. Molecular Ecology Resources <\/strong>e70060. https:\/\/doi.org\/10.1111\/1755-0998.70060<\/a><\/em><\/p>\n

da Silva J., Bertola L.D., DeWoody J.A., Steeves T., Sunnucks P., Vilaca S. & Hoban S. (2025) Conserving genetic diversity in accordance with the Global Biodiversity Framework. Annual Reviews of Animal Biosciences<\/strong> 14 (invited paper) https:\/\/www.annualreviews.org\/content\/journals\/10.1146\/annurev-animal-030424-070756<\/em><\/a> .<\/p>\n

DeLisle Z.J., Andritsch A.M., Swihart R.K. & DeWoody J.A.(2026) Regional coyote (Canis latrans<\/em>) densities estimated from camera trapping covary with deer productivity, anthropogenic land use, and human-coyote conflicts. Wildlife Biology<\/strong> 2026:e01623 doi: 10.1002\/wlb3.01623<\/em><\/p>\n

Geue J., Bertola L., Bloomer P., Br\u00fcniche-Olsen A., da Silva J., DeWoody J.A., Fedorca A., Godoy J. A., Gruber C., Hunter M., Hilvsom C., Jensen E., Kopatz A., MacDonald A., P\u00e9rez-Espona S., Piaggio T., Pierson J.., Russo I-R., Senn H., Sunnucks P., Segelbacher G., Leigh D. (2026) A practical framework for identifying genetic subpopulations and ESUs: insights for IUCN assessments and broader management. BioScience<\/strong>, in press.<\/em><\/p>\n

Allen N.M., Mularo A.J., Jeon J.Y., Hernandez A.G., Streckfuss E.S., Ryberg W.A., Hibbits T.J., Bowers B.C., Crump P. & DeWoody J.A. (2026) Whole genome resequencing data provide high-resolution conservation insights into population structure and life history. Conservation Genetics<\/strong>, in press.<\/em><\/p>\n

 <\/em>_________________<\/p>\n

Black A.N., Jeon J.Y., McCreedy C., Janjua S., Heenkenda E.J., Mathur S., Ferree E., Fesnock-Parker A.L., Hernandez A., & J.A. DeWoody.  (2026) Conservation genomics of California towhee (Melozone crissalis<\/em>) in relation to the official list of endangered and threatened wildlife. Submitted.<\/em><\/p>\n

Jeon Y.J., Mularo A.J., Allen N., Heenkenda E.J., Bickham J.W., Black A.N. & DeWoody J.A. (2026) Genomic metrics can inform listing processes associated with the conservation of threatened and endangered species. Submitted.<\/em><\/p>\n

van Oosterhout C., DeWoody J.A., Godoy J.A., Gueu J.C., Leigh D.M. & Sunnucks P. (2026) Genetic load in evolutionarily significant units: conservation and management implications. Submitted<\/em>.<\/p>\n

Mularo A.M., Black A.N., Haukos D.A., Bondo K.J., Bernal X.E., Lowe Z.E. & DeWoody J.A. (2026) Testing the genic capture hypothesis with  genome resequencing data in a wild lekking avian species. Submitted<\/em>.<\/p>\n

Sample R.D., Delisle Z.J., DeWoody J.A., Pierce J.M., Fei S., Webster C.R., Swihart R.K & Jenkins M.A. (2026) Winter diet plasticity of a large ungulate across gradients of landscape characteristics, browse intensity, and population density. Submitted<\/em>.<\/p>\n

Ji Y., Wu L., Li D., Feng S., Fang Q., Xiong Y., Chang Y., Cooper J.C., Yu X., Zhang K., Tang S., She H., Wang H., Zhang D., Song G., Fan P., Zhou J., Ma L., Qu Y., Jia C., Sheard C., DeWoody J.A., Tobias J.A., Zhang G., Zhai W., Lei F. (2026) Flight characters and metabolic traits shape genomic evolutionary rates in birds. Submitted<\/em>.<\/p>\n

Faust L.J., Andrews J., Ball A., Biddle R., Bladow R., Chaille A., Corlay M., Cowl V., Curry C., Dorsey Candice, DeWoody J.A., Eyres A., Ferrie G.M., Fienieg E., Franklin A.D., Latch E.K., Putnam A., Eebes K.S. & Williams L. (2026) Securing the future: challenges and opportunities for viable animal populations in the next 50 years. Submitted.<\/em><\/p>\n

Allen N.M., Br\u00fcniche-Olsen A., Jeon J.Y., Mularo A.J., Bickham J.W., Urban R.J. & DeWoody J.A. (2026) The contemporary Pacific gray whale (Eschrichtius robustus<\/em>) gene pool includes ancestry from a potential ghost population: inferences from population genomics. Submitted.<\/em><\/p>\n

DeWoody J.A. (2026) Forward. Trends and Challenges in Amphibian Conservation<\/em>. Edited by Dr. Amael Borz\u00e9e and Muhammad Rais, PhD.<\/p>\n

Jeon, J.Y., Allen N.M, Heckel A.J., Macias-Duarte A., Toscano-Mel\u00e9ndrez R.J., Mart\u00ednez-Sandoval J.R., Montoya A., McLaughlin J. & DeWoody J.A. (2026) A pangenomic framework on the landscape level reveals adaptation based on structural variants and climate-driven vulnerability in a sedentary bird.<\/p>\n

Personal use e-prints are available upon request from <\/strong>dewoody@purdue.edu<\/strong><\/a>.<\/strong><\/p>\n","protected":false},"excerpt":{"rendered":"

If you’d like to see these papers in reverse chronological order, see my Google Scholar Profile. If you’d like a reprint of a paper, please email me at dewoody@purdue.edu and if possible I\u2019ll send you an electronic version. BOOKS J.A DeWoody, J.W. Bickham, C. Michler, K. Nichols, O.E. Rhodes, and K. Woeste (eds.) Molecular approaches in […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"page-templates\/full-width.php","meta":{"ngg_post_thumbnail":0,"footnotes":""},"class_list":["post-13","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.purdue.edu\/fnr\/sites\/dewoody\/wp-json\/wp\/v2\/pages\/13","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.purdue.edu\/fnr\/sites\/dewoody\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.purdue.edu\/fnr\/sites\/dewoody\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.purdue.edu\/fnr\/sites\/dewoody\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.purdue.edu\/fnr\/sites\/dewoody\/wp-json\/wp\/v2\/comments?post=13"}],"version-history":[{"count":50,"href":"https:\/\/www.purdue.edu\/fnr\/sites\/dewoody\/wp-json\/wp\/v2\/pages\/13\/revisions"}],"predecessor-version":[{"id":416,"href":"https:\/\/www.purdue.edu\/fnr\/sites\/dewoody\/wp-json\/wp\/v2\/pages\/13\/revisions\/416"}],"wp:attachment":[{"href":"https:\/\/www.purdue.edu\/fnr\/sites\/dewoody\/wp-json\/wp\/v2\/media?parent=13"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}

Br\u00fcniche-Olsen A., Westerman R., Kazmierczyk Z., Vertyankin V.V., Godard-Codding C., Bickham J.W. & DeWoody J.A. (2018) The inference of gray whale (Eschrichtius robustus<\/em>) population attributes from whole-genome sequences.  BMC Evolutionary Biology<\/strong>18(87) https:\/\/doi.org\/10.1186\/s12862-018-1204-3<\/a><\/em><\/p>\n