Services
The Core provides bioinformatic analysis services for Next Generation Sequencing (NGS) data in various applications to support biological research. A distinguishing feature of the Core is its experience with several non-model organisms. A list of NGS applications in different species for which the Core has provided data analyses can be found below. The Core also provides consultation for experimental design and software selection, training through workshops and letters of support for grant proposals that incorporate the Core in its research budget. Please contact us for further information.
| NGS Application | Species |
|---|---|
| RNA-Seq | Cattle; Mosquito; Cockroach; Zebrafish; Pig; Maize; Soybean; Mouse; Common bean; Wheat; Petunia; Sweet potato; Walnut; Sheep; Cyanobacteria; Acacia; Horseweed; Arabidopsis; Hessian fly; Listeria; Tomato; Apple; Drosophila; Moth; S. aureus; Fern; Horse weed |
| Noncoding RNA-Seq | Human; Mouse; S. aureus |
| SNP and CNV | Plasmodium; Sweet potato; Walnut; Sorghum; Maize; Arabidopsis; Honey bee; Listeria; S. aureus; Zebra fish; Honey bee |
| SSR | Sweet potato; Moniliophthora; Guyanagaster; Coffee rust; Stenocarpella |
| miRNA | Human; Mouse; Cat; Zebrafish; Wheat |
| Metagenomics | Horse; Termite; Soil; Listeria |
| Metatranscriptomics | Termite; Soil |
| Transcriptome Assembly | Sweet potato; Walnut; Acacia |
| Genome Assembly | Cotton; Listeria; Acetobacter |
| Gene Prediction | Cotton; Listeria; Stenocarpella; Acetobacter |
| Gene Annotation | Sweet potato; Acacia; Hessian fly; Cotton; Stenocarpella; Listeria; Acetobacter; Horse weed |
Epigenomics
|
Common bean; Switch grass Switch grass; Wheat Human; Switch grass Mouse |
| Phylogenomics | Cotton; Moths; Fungi; Listeria |
| RAD-Seq | Tick; Lasthenia |
| Comparative Genomics | Walnut; Acacia; E. coli |
| Microarray | Cyanobacteria; Pig |
| BAR-Seq | Yeast |
| siRNA screening | Human |
| GBS | Soybean |