Bioinformatics Core

Transcriptome Analysis

  • RNA-Seq – quantification of known genes and identification of statistically significant differentially expressed genes between multiple treatment groups
  • miRNA – identification of novel miRNAs, quantification of known/novel miRNAs and identification of differentially expressed miRNAs between multiple treatment groups
  • lncRNA – identification of novel ncRNAs, quantification of known/novel ncRNAs and identification of differentially expressed ncRNAs between multiple treatment groups
  • Microarray – identification of statistically significant differentially expressed genes hybridized on microarray between multiple treatment groups

Samples of data visualization from our analyses

Heatmap of selected genes in microarray and RNA-seq methods
Heatmap of selected genes in microarray and RNA-seq methods
MA plot between two conditions in RNA-seq experiment
MA plot between two conditions in RNA-seq experiment