Interdisciplinary Life Science - PULSe Great research is a matter of choice

Ying Li

Ying Li Profile Picture

Assistant Professor of Horticulture
Horticulture and Landscape Architecture


Contact Info:

li2627@purdue.edu


Training Group(s):
Computational and Systems Biology


Current Research Interests:

Our lab is interested in studying how crops respond to environmental stimuli at transcriptional and epigenetic levels, using cutting-edge genomics and epigenomics approaches. Plants have evolved a sophisticated system to respond to environmental challenges such as nutrient deficiency and drought. Understanding this regulatory system is vital to agriculture productivity and environmental sustainability.

In our lab, we apply cutting-edge molecular tools and computational approaches to probe gene regulatory networks underlying environmental responses. We harness the power of omics to develop a comprehensive understanding of plant responses at both transcriptional and epigenetic levels. Our ultimate goal is to identify key molecular players including epigenetic regulators to engineer better crops that are more resilient to adverse conditions.



Selected Publications:

Ying Li*, Indrani Mukherjee*, Karen E Thum, Milos Tanurdzic, Manpreet S Katari, Mariana Obertello, Molly B Edwards, W. Richard McCombie, Robert A Martienssen, Gloria M Coruzzi. The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology 2015: 16 (79) *Equal contribution.

Ying Li, Kranthi Varala, Gloria M Coruzzi. From milliseconds to lifetimes: Tracking the dynamic behavior of transcription factors in gene networks. Trends in Genetics 2015: 31(9)

Alessia Para*, Ying Li*, Amy Marshall-Colón*, Kranthi Varala*, Nancy J Francoeur, Tara M Moran, Molly B Edwards, Christopher Hackley, Bastiaan OR Bargmann, Kenneth D Birnbaum, W Richard McCombie, Gabriel Krouk, Gloria M Coruzzi. Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis. Proceedings of the National Academy of Sciences 2014: 111 (28). * Equal contribution.

Ying Li, Gabriel Krouk, Gloria M Coruzzi, Sandrine Ruffel. Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants. Journal of Experimental Botany 2014: 65 (19)

Ying Li, Kranthi Varala and Matthew E Hudson. A survey of the small RNA population during far-red light-induced apical hook opening. Frontiers in Plant Science 2014: 5 (156)

Ying Li, Kranthi Varala, Stephen P Moose and Matthew E Hudson. The inheritance pattern of 24 nt siRNA clusters in Arabidopsis hybrids is influenced by proximity to transposable elements. PLoS One 2012: 7 (10)

Ying Li, Kankshita Swaminathan, Matthew E Hudson. Rapid, organ-specific transcriptional responses to light regulate photomorphogenic development in dicot seedlings.Plant Physiology 2011: 156 (4)

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