Dr. Joseph Irudayaraj

 

PUBLICATIONS

Peer Reviewed Manuscripts (Citations >8000; h_index: >50; i10_Index: >165)

  1. Cui, Y. and Irudayaraj, J. 2014. Dissecting the behavior and function of MBD3 in DNA methylation homeostasis by single-molecule spectroscopy and microscopy. Nucleic Acids research. (Conditionally accepted).
  2. Vidi, P., Liu, J., Lelièvre, S., and Irudayaraj, J. 2014. Nanoscale localization microscopy reveals reduced chromatin mobility in response to DNA damage in single live cells”, Journal of Cell Science. (Conditionally accepted)
  3. Shalaginov, M.Y., Vorobyov, V.V., Liu, J., Ferrera, M., Akimov, A., Lagutchev, A., Smolyaninov, A., Klimov, V., Irudayaraj, J., Kildishev, A., Boltasseva, A., and Shalaev, V. 2014. Enhancing the nanodiamond nitrogen-vacancy single-photon source with TiN/AlScN hyperbolic metamaterial superlattice. Laser & Photonics Reviews. (cond. accepted)
  4. Cho, I-H., Bhandari, P., Patil, P., and Irudayaraj, J. 2015. Membrane filter-assisted surface enhanced Raman spectroscopy for the rapid detection of E. coli O157:H7 in ground beef Biosensors and Bioelectronics, 64: 171-176.
  5. Liu, J., Ishii, S., Shalaev, V. and Irudayaraj, J. 2014. Quantifying local density of optical states in single nanorods by fluorescence lifetime distribution. New Journal of Physics. 16, 063069.
  6. Craig, A., Franca, A., Oliveira, L., Irudayaraj, J., and Ileleji, K. 2014. Application of elastic net and infrared spectroscopy in the discrimination between defective and non-defective roasted coffees. Talanta 128, 393-400.
  7. Cui, Y., Choudhury, S., and Irudayaraj, J. 2014. Quantitative real-time kinetics of optogenetic proteins CRY2 and CIB1/N using single-molecule tools. Analytical biochemistry 458, 58-60.
  8. Cho, I-H., Mauer, L., and Irudayaraj, J. 2014. In-situ fluorescent immunomagnetic multiplex detection of foodborne pathogens in low numbers. Biosensors & Bioelectronics. 57, 143- 148.
  9. Narsireddy, A., Vijayashree, K., Irudayaraj, J., Manorama, S., and Rao M. Targeted in vivo photodynamic therapy with epidermal growth factor receptor-specific peptide linked nanoparticles. International Journal of Pharmaceutics. 471(1-2):421-9.
  10. Naik, G., Saha, B., Liu, J., Saber, S., Stach, E., Irudayaraj, J., Sands, T., Shalaev, V., and Boltasseva, A. 2014. Epitaxial superlattices with titanium nitride as a plasmonic component for optical hyperbolic metamaterials. Proceedings of the National Academy of Sciences 111 (21), 7546-7551.
  11. Chowdhury, B., Cho, I., Cui, Y., and Irudayaraj, J. 2014. Detection of 5mC, 5hmC, 5fC, and 5caC using a modified ELISA approach. Analytica Chimica Acta. In Press.
  12. Chen, H., Weng, T-W., Ticcitelli, M., Cui, Y., Irudayaraj, J., and Choi, J. 2014. Understanding the Mechanical Properties of DNA Origami Tiles and Controlling the Kinetics of Their Folding and Unfolding Reconfiguration. JACS. 136(19);6995-7005.
  13. Kadam, U., Schulz, B., and Irudayaraj, J. 2014. Detection and quantification of alternative splice sites in Arabidopsis genes AtDCL2 and AtPTB2 with highly sensitive surface enhanced Raman spectroscopy (SERS) and gold nanoprobes. FEBS letters 588 (9), 1637-1643.
  14. Vidi, P-A., Liu, J., Salles, D., Jayaraman, S., Dorfman, G., Gray, M., Abad, P., Moghe, P., Irudayaraj, J., Wiesmüller, L., and Lelièvre, S. 2014. NuMA promotes homologous recombination repair by regulating the accumulation of the ISWI ATPase SNF2h at DNA breaks. Nucleic Acids Research. 42(10):6365-79.
  15. Lee, K., Lee, L., and Irudayaraj, J. 2014. In vivo real-time quantification of intracellular mRNA using plasmon spectroscopy. Nature Nanotechnology. 9(6): 474-480.
  16. Cho, I., Mauer, L. and Irudayaraj, J. 2014. In-situ fluorescent immunomagnetic detection of foodborne pathogens. Biosensors and Bioelectronics. 57:143-148.
  17. Chen, Y., Damayanti, N., Dunn, K., Irudayaraj, J., and Zhou, F. 2014. Diversity of two forms of DNA methylation in the brain. Frontiers in Genetics. 5(46):1-23. PMCID 3948076, doi: 10.3389/fgene.2014.00046.
  18. Mura–S. Greppi, G., Roggero, P., Musu, E., Pittails, D., Carletti, A., Ghiglieri, G., and Irudayaraj, J. 2014. Functionalized gold nanoparticles for the detection of nitrates in water International. J. Environmental Science and Technology. DOI 10.1007/s13762-013-0494-7.
  19. Kadam, US, Schulz, B, and Irudayaraj J. 2014. Quantification of abortive transcription of TWD1 gene in Arabidopsis thaliana, using Surface-enhanced Raman spectroscopy (SERS). Plant Biotechnology. 12(5):568-577.
  20. Damayanti, N., Craig, A., and Irudayaraj, J. 2013. Hybrid FLIM-Elastic net platform for label-free profiling of breast cancer. Analyst. 138(23): 7127-34.
  21. Damayanti, N., Fang, Y., Parikh, M., Craig, A., Kirshner, J., and Irudayaraj, J. 2013. Differentiation of Cancer Cells in 2D and 3D breast cancer models by Raman spectroscopy. Biomedical Optics. 18(11): 117008. doi: 10.1117/1.JBO.18.11.117008.
  22. Yi, C., Cho, I., Chowdhury, B., and Irudayaraj, J. 2013. Real-time dynamics of methyl CpG binding domain protein 3 and its role in DNA demethylation by fluorescence correlation spectroscopy. Epigenetics. (Cover Article), 8(10): 1089-1100.
  23. Zhou, Z., Kadam, U., and Irudayaraj, J. 2013. One-stop Genomic DNA Extraction by Salicylic Acid Coated Magnetic Nanoparticles. Analytical Biochemistry. 442(2): 249-252.
  24. Cho, I., Radadia, A., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R., and Irudayaraj, J. 2014. Nano/Micro and Spectroscopic Approaches to Food Pathogen Detection. Annual Review of Anal. Chemistry. 7(1):65-88. (Invited Peer reviewed from highly accomplished groups).
  25. Dong, C., Chowdhury, B., and Irudayaraj, J. 2013. Quantum Dots trafficking in cells probes by single molecule methods. Analyst. 138 (10): 2871-2876.
  26. Shalaginow, M., Shii, S., Liu, J., Liu, J., Irudayaraj, J., Lagutchev, A., Kaldishev, and Shalaev, V. 2013. Broadband enhancement of spontaneous emission from nitrogen-vacancy centers in nanodiamonds by hyperbolic metamaterials. Applied Physics Letters. 102(17):173114-4.
  27. Damayanti, N., Parker, L., and Irudayaraj, J. 2013. Monitoring phosphorylation in live cells by lifetime imaging. Angew Chemie. 52(14): 3931-3934.
  28. Cho, I. and Irudayaraj, J. 2013. In-situ immunogold nanoparticle network-based ELISA for biosensor for highly sensitive pathogen detection. Intl. J. Microbiology. 164(1): 70-75.
  29. Cho, I and Irudayaraj, J. 2013. Lateral-flow immune concentration for detection of Listeria monocytogenes. Analytical Bioanalytical Chemistry. 405(10): 3313-3319.
  30. Lee, K. and Irudayaraj, J. 2013. Correct Spectral Conversion between Surface-enhanced Raman and Plasmon Resonance Scattering from Nanoparticle Dimers for Single Molecule Detection. Small J. 9(7): 1106-1115.
  31. Wang, Y. and Irudayaraj, J. 2013. Surface-enhanced Raman spectroscopy at single molecule scale and its implication in biology. Philosophical Transactions B. 368(1611): 20120026.
  32. Mura, S., Greppi., G., Innocenzi, P., Piccinini, M., Figus, C., Marongiu, L., Guo, C., and Irudayaraj, J. 2013. Nanostructured thin films as surface-enhanced Raman scattering substrates. J. Raman Spectroscopy. 44:35-40.
  33. Liu, J. and Irudayaraj, J. 2013. Second Harmonic Generation Correlation Spectroscopy for Single Molecule Experiments. Optics Express. 21(22):27063-27073.
  34. Jae-Sung, K., Ravindranath, S., Aloke, K., Irudayaraj, J. and Wereley, S. 2012. Opto- electrokinetic manipulation technique for high-performance on-chip biological assay. Lab on Chip. 12(23):4955-4959. (Cover article & top 10 in LOC citations; Featured in Nature Photonics).
  35. Ravindranath, S., Kadam, U., and Irudayaraj, J. 2012. Intracellularly grown gold nanoislands as SERS substrates for monitoring chromate, sulfate and nitrate localization sites in remediating bacteria biofilms by Raman chemical imaging. Analytica Chimica Acta. 745:1-9. (Cover article).
  36. Stephen, K., Nakatsu, C., and Irudayaraj, J. 2012. Surface Enhanced Raman Spectroscopy (SERS) for the discrimination of Arthrobacter strains based on variations in cell surface composition. Analyst. 137: 4280-4286.
  37. Dong, C. and Irudayaraj, J. 2012. Hydrodynamic Size-Dependent Cellular Uptake of Aqueous QDs Probed by Fluorescence Correlation Spectroscopy. J. Physical Chem. C. 116(40):12125-32.
  38. Chen, J., Miller, A., Kirchmaier, A., and Irudayaraj, J. 2012. Single Molecule Tools Elucidate H2A.Z Nucleosome Composition. J. Cell Science. 125(12):2954-2964.
  39. Wang, Y., Book, B., and Irudayaraj, J. 2012. Folic acid protected doxorubicin coated silver nanocarriers for targeted drug delivery. J. Biomedical Nanotechnology. 8(5):751-759.
  40. Book, B., Wang, Y., and Irudayaraj, J. 2012. Multifunctional gold nanorods for targeted drug delivery using 2-photon excitation. Euro Journal of Medicinal Chemistry. 48:330-337.
  41. Mura, S., Greppi, G., Marongiu, M., Roggero, P., Ravindranath, S., Mauer, L., Schibeci, N., Perria, N., Piccinini, M., Innocenzi, P., and Irudayaraj, J. 2012. FTIR nanobiosensors for Escherichia coli detection. 2012. Beilstein J. Nanotechnology. 3:885-92.
  42. Wang, Y., Chen, J., and Irudayaraj, J. 2011. Nuclear targeting dynamics of gold nanoclusters for enhanced therapy of HER2+ breast cancer. ACS NANO. 5(12):9718-9725.
  43. Guo, C., Book, B., and Irudayaraj, J. 2011. Protein-directed reduction of Graphene oxide and intracellular imaging. Chemical Communications. 47(47):12658-12660.
  44. Panchapakesan, B., Book, B., Seth, R., and Irudayaraj, J. 2011. Gold nanoprobes for theragnostics and diagnostics. Journal of Nanomedicine, 6(10):1-7.
  45. Lee, K., Drachev, V., and Irudayaraj, J. 2011. DNA-Gold nanoparticle networks grown at cell surface marker sites: Diagnostics of cancer stem cells. ACS NANO. 5(3):2109-2117.
  46. Wang, Y. and Irudayaraj, J. 2011. A SERS DNAzyme biosensor for lead ion detection. Chemical Communications. 47:4394-4396.
  47. Chen, J., Nag, S., and Irudayaraj, J. 2011. Single molecule in vivo analysis of Toll-like 9 and CpG DNA interaction. PLoS ONE. 6(4):e17991 (8 pages).
  48. Ravindranath, S., Henne, T., Thompson, D., and Irudayaraj, J. 2011. Intracellular bioreduction of Chromate-decorated Gold nanoparticles by Shewanella oneidensis MR-1 by Raman chemical imaging. ACS NANO. 5(6):4729-36.
  49. Guo, C. and Irudayaraj, J. 2011. Fluorescent Ag clusters via a Protein-directed approach as a Hg(II) ion sensor. Analytical Chemistry. 83(8):2883-9.
  50. Ravindranath, S., Wang, Y., and Irudayaraj, J. 2011. SERS driven Cross-platform based multiplex pathogen detection. Sensors & Actuators: B. Chemical. 152: 183-190.
  51. Ravindranath, S., Henne, K., Thompson, D., and Irudayaraj, J. 2011. Surface-enhanced Raman Imaging of Intracellular Bioreduction of Chromate in Shewanella oneidensis. PLoS ONE. 6(2): e16634 (10 pages).
  52. Mura, S., Corrias, F., Stara, G., Piccinini, M., Secchi, N., Marongiu, D., Innocenzi., P., Irudayaraj, J., and Greppi, G. 2011. Innovative composite films of chitosan, methylcellulose and nanoparticles. Nanoscale Food Sci., Engineering & Technology. J. Food Science. 76(7):N54-N60.
  53. Wang, Y., Ravindranath, S., and Irudayaraj, J. 2010. Separation and detection of multiple pathogens in a food matrix by SERS nano probes. Anal. & BioAnal. Chemistry. 399 (3):1271-8.
  54. Rout, C., Kumar, A., Xiong, G., Irudayaraj, J., and Fisher, T. 2010. Au nanoparticles on graphitic petal arrays for surface-enhanced Raman spectroscopy. Applied Physics Letters. 97(13):133108-133108-3.
  55. Book, B., Chen, J., and Irudayaraj, J. 2010. Quantification of receptor targeting aptamer binding characteristics using single-molecule spectroscopy. Biotechnology and Bioengineering (Online DOI: 10.1002/bit.23043). 108 (5):1222-1227.
  56. Wang, Y., Seebald, J., Szeto, D., and Irudayaraj, J. 2010. Biocompatibility and biodistribution of surface-enhanced Raman scattering nanoprobes in zebrafish embryos in vivo and multiplex imaging. ACS NANO. 4(7):4039-53.
  57. Chen, J. and Irudayaraj, J. 2010. Fluorescence lifetime cross correlation spectroscopy resolves EGFR and antagonist interaction in live cells. Analytical Chemistry. 82(15):6415-21.
  58. Wang, Y., Lee, K., and Irudayaraj, J. 2010. Silver nanosphere SERS probes for sensitive identification of pathogens. J. Physical Chemistry C. 114(39): 16122-16128.
  59. Miller, A., Takasuka, T., Chen, J., Kaufman, P., Jacobi, J., Irudayaraj, J., and Kirchmaier, A. 2010. PCNA Is Required for Cell-Cycle Regulated Silent Chromatin on Replicated and Nonreplicated Genes. J. Biological Chemistry. 285(45):35142-54.
  60. Nag, S., Chen, J., Maiti, S., and Irudayaraj, J. 2010. Measurement of the attachment and assembly of small amyloid-beta oligomers on live cell membranes at physiological conditions using single molecule tools. Biophysical Journal. 99(6):1969-75.
  61. Wang, Y., Lee, K., and Irudayaraj, J. 2010. SERS aptasensor from nanorod-nanopaticle junction for protein detection. Chem. Communications. 46(4):613-615.
  62. Krishnamurthy, K., Tewari, J., Irudayaraj, J., and Demirci, A. 2010. Microscopic and Spectroscopic Analysis of Inactivation of Staphylococcus aureus by Pulsed UV-Light and Infrared Heating. Food and Bioprocess Engineering: An International J. 3:93-104.
  63. Davis, R., Irudayaraj, J., Reuhs, B., and Mauer, L. 2010. Detection of E. coli O157:H7 from ground beef using FTIR spectroscopy and Chemometrics. J. Food Science, 75(6):M340-M346.
  64. Davis, R., Burgula, Y., Deering, A., Irudayaraj, J., Reuhs, B., and Mauer, L. 2010. Detection and differentiation of live and heat-treated Salmonella enterica serovars inoculated onto chicken breast using FTIR spectroscopy. J. Applied Microbiology. 109(6):2019-2031.
  65. Chen, J. and Irudayaraj, J. 2009. Quantitative investigation of compartmentalized dynamics of ErbB2 targeting gold nanorods in live cells by single molecule spectroscopy. ACS NANO. 3:4071-4079. (Featured in NIH-NCI Nanotech. alliance, January News and Science Daily).
  66. Wang, C. and Irudayaraj, J. 2009. Multifunctional magnetic-Optical nanoparticle probes for simultaneous detection, separation, and ablation of multiple pathogens. Small. 2(6):283-289.
  67. Kumar, V. and Irudayaraj, J. 2009. SERS in salt wells. Chemphyschem. 10(15):2670-2673.
  68. Sun, L. and Irudayaraj, J. 2009. PCR-free quantification of splice variants in Cancer Gene using Surface Enhanced Raman Spectroscopy. J. Phys. Chem. 113:5980-5983.
  69. Sun, L. and Irudayaraj, J. 2009. Quantitative Surface Enhanced Raman for gene expression estimation, Biophysical Journal. 96:4609-16.
  70. Wang, C., Chen, J. Talavange, T. and Irudayaraj, J. 2009. Gold nanorod/Fe3O4 nanoparticle “Nano-Pearl-Necklaces” for simultaneous targeting, dual-mode imaging, and photothermal ablation of cancer cells. Angewandte Chemie, 121(15):2797-2801.
  71. Chen, J., Wang, C., and Irudayaraj, J. 2009. Ultrasensitive on-step immunoassay in blood serum using gold nanoparticle probes by single molecule spectroscopy. Biomedical Optics Letters, 14(4). 040501.
  72. Lee, K. and Irudayaraj, J. 2009. Periodic and dynamic 3-D gold nanoparticle-DNA network structures for surface-enhanced raman spectroscopy-based quantification. J. Phys. Chem. C. 113:5980-5983.
  73. Ravindranath, S., Mauer, L., Chitrita, D., and Irudayaraj, J. 2009. Biofunctionalized magnetic nanoparticle integrated mid-infrared pathogen sensors for food matrices. Analytical Chemistry, 81(8):2840-2846.
  74. Vidi, P., Chen, J., Irudayaraj, J. and Watts, V. 2008. Higher-order Adenosine A-2A receptor oligomers revealed by BiFC-FRET and FLIM. FEBS Letters, 582(29):3985-3990.
  75. Yu, C., Jacob, R., Ritchie, K., Prasad, N., and Irudayaraj, J. 2008. Receptor Overexpression or Inhibition Alters Cell Surface Dynamics of EGF-EGFR interaction: New Insights from Real-time Single Molecule Analysis. Biochemical and Biophysical Res. Communication, 378(3):376-382.
  76. Bakker, R., Yuan, H., Liu, Z., Pedersen, R., Boltasseva, A., Chen, J., Irudayaraj, J., Kildishev, A., Drachev, V., and Shalaev, V. 2008. Nanoantenna induced fluorescence enhancement: dipolar coupling and reduced lifetimes. New Journal of Physics, 10:125022.
  77. Sun, L., Yu, C. and Irudayaraj, J. 2008. Raman multiplexers for alternative gene splicing. Analytical Chemistry. 80(9):3342-9.
  78. Wang, C. and Irudayaraj, J. 2008. Gold nanorod probes detect multiple pathogens. Small. 4(12):2204-2208.
  79. Shamsaie, A., Heim, J. and Irudayaraj, J. 2008. Quantification of MBA in living cell by surface enhanced raman spectroscopy. Chemical Physics Letters, 461:131-135.
  80. Varghese, L., Sinha, R., and Irudayaraj, J. 2008. Single molecule kinetic investigations of protein association and dissociation using fluorescence cross-correlation spectroscopy. Analytica Chimica Acta. 625(1):103-109.
  81. Sarkar, T. and Irudayaraj, J. 2008. Carboxyl coated magnetic nanoparticles for mRNA isolation and extraction of supercoiled plasmid DNA. Analytical Biochemistry. 379:130-132.
  82. Sun, L., Yu, C., and Irudayaraj, J. 2007. Surface enhanced Raman scattering based nonfluorescent probes for multiplex detection. Analytical Chemistry, 79(11):3981-3988. (Featured article “No-glow tags for Raman Spectroscopy” in June 1, 2007 issue).
  83. Shamsaie, A., Irudayaraj, J. 2007. Intracellularly Grown Gold Nanoparticles (IGAuN) as Potential SERS Probes. Biomedical Optics. 12(2):020502-1-3. (Most frequently downloaded paper on the SPIE digital library, 2008).
  84. Mizrach, A., Schmilovitch, Z., Korotic, R., Irudayaraj, J., and Shapira, R. 2007. Yeast detection in apple juice using Raman spectroscopy. Transactions of ASABE 50(6):1-8. (Superior paper Award, ASABE 2008 International meeting).
  85. Yu, C., Naksharti, H., and Irudayaraj, J. 2007. Identity profiling of cell surface markers by multiplex gold nanorod probes. Nano Letters, 7(8): 2300-2306.
  86. Yu, C., and Irudayaraj, J. 2007. A multiplex biosensor using gold nanorods. Analytical Chemistry. 79(2): 572-579. (2nd Most cited in Analytical Chemistry in 2007 and 5th Most cited as of 3/08).
  87. Yu, C. and Irudayaraj, J. 2007. Sensitivity and Selectivity limits of multiplex nanoSPR biosensor assays. Biophysical Journal. 93:3684-3692.
  88. Yu, C., Varghese, L., and Irudayaraj, J. 2007. Surface modification of CTAB capped gold nanorods to make molecular probes. Langmuir, 23: 9114-9119.
  89. Kouassi, G., Wang, P., Sreevatsan, S., Irudayaraj, J. 2007. Detection of prion protein on streptavidin-aptamer mediated magnetic and gold-coated magnetic nanoparticles. Biotech Progress 23(5):1239-44.
  90. Yu, C., Gestl, E., Eckert, K., Allara, D., Irudayaraj, J. 2006. Characterization of Human Breast Epithelial Cells by Confocal Raman Microspectrometry. J. Cancer Diagnosis and Prevention, 30(6):1-10.
  91. Beullens, K., Kirsanov, D., Irudayaraj, J., Rudnitskaya, A., Legin, A., Nicolai, B., and Lammertyn, J. 2006. The electronic tongue and ATR-FTIR for rapid detection of sugars and acids in tomatoes. Sensors and Actuators, B: Chemical, v 116, n 1-2, Jul 28, 2006, p 107-115.
  92. Gupta, M., Irudayaraj, J., Schmilovitch, Z., and Mizrach, A. 2006. Quantification of foodborne pathogens in different food matrices using FTIR and artificial neural networks. Trans of ASABE 49(5):1249-1256.
  93. Kouassi, G. and Irudayaraj, J. 2006. Magnetic and gold-coated magnetic particles as a DNA sensor. Analytical Chemistry. 78(10):3234-3241. (Top 10 most accessed article in 2006 in Analytical Chemistry (ranked 6th in the list); Ranked in the Top 100 (11th in the list) of Nanomedicine publications for 2006 by Ion Channel media group).
  94. Kouassi, G. and Irudayaraj, J. 2006. A nanoparticle-based immobilization assay for prion-kinetics assay. Journal of Nanobiotechnology. 48(8):1-10. (Accessed 2026 times).
  95. Kizil, R. and Irudayaraj, J. 2006. Discrimination of irradiated starch gels using FT-Raman spectroscopy and chemometrics. J. Agric. and Food Chemistry, 54(1):13-18. (Most accessed article in 01/06-03/06).
  96. Yu, C. and Irudayaraj, J. 2006. Detection and identification of pathogenic microorganisms in mixed cultures by FTIR spectroscopy. Trans of ASABE, 49(5):1623-1632. (Honorary mention in the best paper competition at the 2007 ASABE meeting).
  97. Waswa, J., Debroy, C., and Irudayaraj, J. 2006. Rapid detection of Salmonella enteritidis and Escherichia coli using the BiacoreTM Surface Plasmon Resonance biosensor. J. Food Process Engineering, 29: 373-385.
  98. Waswa, J., Debroy, C., and Irudayaraj, J. 2006. Rapid detection of Salmonella enteritidis and Escherichia coli using the BiacoreTM Surface Plasmon Resonance biosensor. J. Food Process Engineering, 29: 373-385.
  99. Yu, C., Ganjoo, A., Jain, H., Pantano, C., and Irudayaraj, J. 2005. Towards a mid-IR biosensor: Detection and fingerprinting of pathogens on chalcogenide films. Anal. Chem. 78(8):2500-2506.
  100. Ganjoo, A., Jain, H., Song, R., Yu, C., Ryan, J., Irudayaraj, J., Ding, Y., and Pantano, C. 2005. Chalcogenide Glass Waveguides for IR Evanescent Wave Sensors. J. Noncrystalline Solids 352:584-588.
  101. Swaminathan, A., Irudayaraj, J., and Ryan, T. 2004. Comparison of mono and dithiol surfaces on surface plasmon resonance biosensors for detection of Staphylococcus aureus. Sensors and Actuators B, 114:192-198.
  102. Schmilovitch, Z., Mizrach, A., Kritzman, G., Korotic, R., Irudayaraj, J., and Debroy, C. 2005. Detection of bacteria with low resolution raman spectroscopy. Trans of ASAE. 48(5):1843-50.
  103. Vaseashta, A. and Irudayaraj, J. 2005. Nanostructured and nanoscale devices and sensors. Journal of Optoelectronics and Advanced Materials. 7(1):35-42.
  104. Kouassi, G., Irudayaraj, J., and McCarty, G. 2005. Examination of Cholesterol oxidase attachment to magnetic nanoparticles. J. Nanobiotechnology. (3)1:1-9. (3rd most accessed article (all time) in J. Biomagnetic Research and Tech - download access hit of 13,234).
  105. Kouassi, G., Irudayaraj, J., and McCarty, G. 2005. Activity of glucose oxidase functionalized onto iron nanoparticles. J. Biomagnetism and Technology. 3:1.
  106. Swaminathan, A., Irudayaraj, J., and Ryan, T. 2005. Self-assembled monolayer-based surface plasmon immunosensor for detection of E. coli O157:H7. Biosensors and Bioelec. 21(7):998-06.
  107. Yu, C. and Irudayaraj, J. 2005. Spectroscopic characterization of microorganisms by FTIR microspectroscopy. J. Biopolymers. 77(6):368-377.
  108. Lammertyn, J., Verboven, P., Veraverbeke, E., Vermeir, S., Irudayaraj, J., and Nicolai, B. 2005. Analysis of fluid flow and reaction kinetics in a flow injection analysis biosensor. Sensors and Actuators B. 114(2):728-736.
  109. Other Publications

  110. Davis, R., Irudayaraj, J., Reuhs, B., and Mauer, L. 2010. Detection of E. coli O157:H7 from ground beef using FTIR spectroscopy and Chemometrics. J. Food Science, 75(6):M340-M346.
  111. Davis, R., Burgula, Y., Deering, A., Irudayaraj, J., Reuhs, B., and Mauer, L. 2010. Detection and differentiation of live and heat-treated Salmonella enterica serovars inoculated onto chicken breast using FTIR spectroscopy. J. Applied Microbiology. 109(6):2019-2031.
  112. Kathiravan, K., Tewari, J., Demirci, A., and Irudayaraj, J. 2010. Microscopic and Spectroscopic Evaluation of Inactivation of Staphylococcus aureus by Pulsed UV Light and Infrared Heating. Food and Bioprocess Tech. 3(1):93-104.
  113. Rudnitskaya, A., Kirsanov, D., Legin, A., Beullens, K., Lammertyn, J., Nicolai, B., and Irudayaraj, J. 2006. Analysis of apples varieties - comparison of electronic tongue with different analytical techniques. Sensors and Actuators, B: Chemical, v 116, n 1-2, Jul 28, 2006, p 23-28.
  114. Krishnamurthy, K., Demirci, A., and Irudayaraj, J. 2007. Inactivation of Staphylococcus aureus in Milk Using Flow-through Pulsed UV-Light Treatment System. Journal of Food Science. 72(7):M233-M239.
  115. Kizil, R. and Irudayaraj, J. 2007. Rapid evaluation and discrimination of ?-irradiated carbohydrates using FT-Raman spectroscopy and canonical discriminant analysis. J. Science of Food and Agriculture, 87(7):1244-1251.
  116. Gupta, M., Irudayaraj, J., Debroy, C., Schmilovitch, Z., and Mizrach, A. 2005. Detection and Differentiation of Food Pathogens using FTIR and Artificial Neural Networks. Trans. of ASAE. 48(5):1889-1892.
  117. Tewari, J. and Irudayaraj, J. 2005. Floral classification of honey using mid-infrared spectroscopy and surface acoustic wave based z-nose sensor. J. Agric. and Food Chem. 53(18):6955-6966.
  118. Dixit, V., Tewari, J., and Irudayaraj, J. 2005. Quantitative and qualitative identification of industrial grade glycerol adulteration in selected commercial red wine using mid-infrared spectroscopy. Applied Spectroscopy. 59(12):1553-1561.
  119. Yang, H., Irudayaraj, J., and Paradkar, M. 2005. Characterization of different edible oils and fats by FTIR, FT-NIR and FT-Raman Spectroscopy. Food Chemistry. 93(1):25-32.
  120. Veraverbeke, E., Lammertyn, J., Nicolaï, B., and Irudayaraj, J. 2005. Spectroscopic evaluation of the surface quality of apple. Journal of Agriculture and Food Chemistry. 53(4): 1046-1051.
  121. Gao, X., Heinemann, P., and Irudayaraj. J. 2005. Non-destructive Apple Bruise Detection with Raman Spectroscopy and its Virtual Instrumental System. Transactions of the Chinese Society of Agricultural Engineering. 21(3):130-133.
  122. Beullens, K., Irudayaraj, J., Nicolai, B., Kirsanov, D., Legin, A., and Lammertyn, J. 2004. Novel techniques for fast taste profiling of tomatoes. Communications in Agriculture Applied Biological Sciences. 69(2): 57-60.
  123. Jun, S. and Irudayaraj, J. 2004. An integrated dynamic model for fungal spore inactivation by selective infrared heating. Transactions of the ASAE. 20(4):481-485.
  124. Sivakesava, S., Irudayaraj, J., and Debroy, C. 2004. Differentiation of microorganisms by FTIR-ATR and FT-NIR spectroscopy. Transactions of the ASAE. 7(3):951-957. (Superior paper award, 2005, ASABE meeting).
  125. Veraverbeke, E., Irudayaraj, J., and Lammertyn, J. 2004. Fast aroma profiling with zNose™: case study on honey adulteration. J. Science of Food and Agriculture. 85:243-250.
  126. Tewari, J. and Irudayaraj, J. 2004. Quantification of saccharides in multiple floral honeys using fourier transform infrared micro-attenuated spectroscopy. Journal of Agriculture and Food Chemistry. 52:3237-3243.
  127. Innawong, B., Mallikarjunan, P., Irudayaraj, J., and Marcy, J.E. 2004. The determination of frying oil quality using Fourier transform infrared attenuated total reflectance. Lebensmittel-Wissenschaft und-Technologie. 37(1): 23-28.
  128. Yang, H., Irudayaraj, J., Delegchoimbol, S., and Walsh, M. 2004. Rheological study of starch and dairy ingredient-based food system. Food Chemistry. 86:571-578.
  129. Ranjan, R., Irudayaraj, J., Reddy, J., and Mujumdar, A.S. 2004. Finite element simulation of stepwise drying of bananas. Journal of Numerical Heat Transfer. Part A. 45:1-16.
  130. Lammertyn, J., Veraverbeke, E., and Irudayaraj, J. 2004. Surface acoustic wave based zNose™ technology for rapid aroma profiling of honey. Sensors and Actuators, 98(1):54-62.
  131. Gupta, M., Irudayaraj, J., and Debroy, C. 2004. Spectroscopic quantification of bacteria using Artificial Neural Networks. Journal of Food Protection. 67(11):2550-2554.
  132. Jun, S. and Irudayaraj, J. 2004. An integrated dynamic model for fungal spore inactivation by selective infrared heating. Transactions of the ASAE. 20(4):481-485.
  133. Yu, C., Irudayaraj, J., Debroy, C., Schmilovich, Z. and Mizrach, A. 2004. Spectroscopic differentiation and quantification of microorganisms in apple juice, J. Food Science, 70: S221-6.
  134. Krishnamurthy, K., Demirci, A., and Irudayaraj, J. 2003. Inactivation of Staphylococcus aureus by pulsed UV-light sterilization. Journal of Food Protection, 67 (5): 1027-1030.
  135. Sivakesava, S., Bober, J., Irudayaraj, J., and Demirci, A. 2003. Spectroscopic determination of multiple components during nisin fermentation. CIGR Journal of Scientific Research and Development. Vol 4. Manuscript FP: 03 008 [ISSN 1682-1130].
  136. Yang, H. and Irudayaraj, J. 2003. Rapid detection of foodborne microorganisms on food surface using Fourier transform Raman spectroscopy. Journal of Molecular Structure. 646: 35-43.
  137. Jun, S., and Irudayaraj, J. 2003. A dynamic fungal inactivation approach using selective infrared heating. Transactions of the ASAE 46 (5): 1407-1412. (Best paper, 2004 ASABE meeting).
  138. Jun, S., Irudayaraj, J., Demirci, A., and Geiser, D. 2003. Pulsed UV-light Treatment of Corn meal for Inactivation of Aspergillus niger. Journal of Food Science Technology 38: 883-888.
  139. Tewari, J. and Irudayaraj, J. 2003. Simultaneous monitoring of organic acids and sugars in fresh and processed apple juice by FTIR-ATR spectroscopy. Applies Spectr. 57(12):1599-1604.
  140. Paradkar, M. and Irudayaraj, J. 2003. Discrimination and classification of adulterants in maple syrup with the use of infrared spectroscopic techniques. J. Science of Fd. and Agric. 83:714-21.
  141. Tewari, J., Mehrotra, R., and Irudayaraj, J. 2003. Direct NIR analysis of sugarcane clear juice using fiber optic transmittance probe. Journal NIR spectroscopy, 11(5):351-356.
  142. Tewari, J. and Irudayaraj, J. 2003. Rapid estimation of Pol content in sugarcane juice using FTIR-ATR Spectroscopy. International Journal of Sugar Tech. 5(3):143-148.
  143. Irudayaraj, J., Xu, F., and Tewari, J. 2003. Rapid determination of invert cane sugar adulteration in honey using FTIR spectroscopy and multivariate analysis. J. Food Science. 68 (7):2040-2045.
  144. Cho, B. and Irudayaraj, J. 2003. A non-contact ultrasound approach for mechanical property determination of cheese. Journal of Food Science. 68(7):2243-2247.
  145. Cho, B. and Irudayaraj, J. 2003. Foreign object and internal defect detection in food materials using Non-contact ultrasound imaging. J. Food Science. April 2003, 68(3): 967-974.
  146. Paradkar, M. and Irudayaraj, J. 2003. Discrimination and classification of adulterants in maple syrup with the use of infrared spectroscopic techniques. J. Science of Fd. and Agric. 83:714-721.
  147. Kizil, R., Irudayaraj, J., and Seetharaman, K. 2002. Characterization of irradiated starches by FT-Raman and FTIR spectroscopy. Journal of Agric Food Chem. 50(14):3912-8.
  148. Paradkar, M. and Irudayaraj, J. 2002. Determination of cholesterol in dairy products using infrared techniques: 1. FTIR spectroscopy. Inti. Journal of Dairy Technology. 55(3):127-132.
  149. Yang, H. and Irudayaraj, J. 2002. Rapid determination of vitamin C by NIR, MIR and FT-Raman techniques", Journal of Pharmacy and Pharmacology. 54(9): 1247-1255.
  150. Paradkar, M. and Irudayaraj, J. 2002. Determination of cholesterol in dairy products by infrared techniques: 2. FT-NIR method. International Journal of Dairy Technology. 55(3):133-138.
  151. Jun, S. and Irudayaraj, J. 2002. Selective far infrared heating system design and evaluation (PART I). Drying Technology–An International Journal. 21(1): 51-67.
  152. Jun, S. and J. Irudayaraj. 2002. Selective far infrared heating system applications and analysis (PART II). Drying Technology–An International Journal. 21(1): 69-82.
  153. Ranjan, R., Irudayaraj, J. and Jun, S. 2002. Simulation of three-dimensional infrared drying using a set of three-coupled equations by the control volume method. Transactions of the ASAE. 45(5): 1661-1668.
  154. Rajendran, V. and Irudayaraj, J. 2002. Detection of glucose, galactose, and lactose in milk with a microdialysis-coupled flow injection amperometric biosensor. J. Dairy Science 85:1357-1361.
  155. Sivakesava, S. and Irudayaraj, J. 2002. Classification of simple and complex sugar adulterants in honey by mid-infrared spectroscopy. International Journal of Food Science and Technology. 37:351-360.
  156. Cho, B. and Irudayaraj, J. 2002. Design and application of a non-contact air instability compensation ultrasound transducer using spatial impulse response. Transactions of the ASAE. 46(3):901-910.
  157. Paradkar, M., Sivakesava, S., and Irudayaraj, J. 2002. Comparison of FTIR, FT-Raman, and NIR spectroscopy in a maple syrup adulteration study. Journal of Food Science. 67(6): 2009-2015.
  158. Deshpande, S.D., Sokhansanj, S., and Irudayaraj J. 2002. Effect of moisture content and storage temperature on respiration of Alfalfa. Biosystems Engin. 82 (1):79-86.
  159. Paradkar, M. and Irudayaraj, J. 2002. Rapid estimation of caffeine content in soft drinks using FTIR spectroscopy. Food Chemistry. 78: 261-266.
  160. Paradkar, M. and Irudayaraj, J. 2002. A Rapid FTIR Spectroscopic method for estimation of caffeine in soft drinks and Total methylxanthines in tea and coffee. Journal of Food Science. 67(7): 2507-2511.
  161. Paradkar, M. and Irudayaraj, J. 2001. Discrimination and classification of beet and cane sugars and their inverts in maple syrup by FT-Raman. Applied Engineering in Agric. 18(3):379-383.
  162. Irudayaraj, J. and Sivakesava, S. 2001. Detection of adulteration in honey by discriminant analysis using FTIR spectroscopy. Transactions of the ASAE 44(3): 643-650.
  163. Cho, B. and Irudayaraj, J. 2001. Acoustic sensor fusion approach for rapid measurement of modulus and hardness of cheddar cheese. Applied Engineering in Agriculture. 17(6): 827-832.
  164. Paradkar, M., Irudayaraj, J., and Sivakesava, S. 2001. Discrimination and classification of beet and cane inverts in different floral honey by FT-Raman spectroscopy. Food Chem. 76:231-239.
  165. Sivakesava, S. and Irudayaraj, J. 2001. Prediction of inverted cane sugar adulteration of honey by FTIR spectroscopy. Journal of Food Science. 66(7): 972-978.
  166. Sivakesava, S., Irudayaraj, J., and Korach, R. 2001. Detection of adulteration in apple juice using FTIR spectroscopy and multivariate statistical methods. Applied Engineering in Agriculture. 17(6):815-820.
  167. Irudayaraj, J., Yang, H., and Sivakesava, S. 2001. Detection of microorganisms on food surface using Fourier transform photoacoustic spectroscopy. J. Molecular Structure. 606:181-188.
  168. Cho, B., Irudayaraj, J., and Bhardwaj, M. 2001. A non-contact ultrasound technique for predicting mechanical properties of cheddar Cheese. Trans. of the ASAE. 44(6): 1759-1762.
  169. Sivakesava, S. and Irudayaraj, J. 2001. Rapid detection of tetracycline in milk using mid infrared spectroscopy. Journal of Dairy Science. 85:487-493.
  170. Yang, H. and Irudayaraj, J. 2001. Characterization of edible coatings and microorganisms on produce surface using depth profile analysis. Applied Spectroscopy 55(5):310-329.
  171. Sivakesava, S. and Irudayaraj, J. 2001. Detection of inverted beet sugar adulteration of honey by FTIR spectroscopy. Journal of the Science of Food and Agric. 81:683-690.
  172. Sivakesava, S., Irudayaraj, J, and Demirci, A. 2001. Monitoring a bioprocess for ethanol production using FT-MIR and FT-Raman spectroscopy. Journal of Industrial Microbiology and Biotechnology 26(4):185-190,196.
  173. Sivakesava, S., Irudayaraj, J, and Demirci, A. 2001. Simultaneous determination of multiple components in lactic acid fermentation using Ft-MIR, NIR, and FT-Raman spectroscopic techniques. Process Biochemistry 37(4):371-378.
  174. Yang, H. and Irudayaraj, J. 2001. Characterization of beef and pork using Fourier transform infrared photoacoustic spectroscopy. Lebebsm.-Wiss. u-Technology 34(6):401-408.
  175. Sivakesava, S. and Irudayaraj, J. 2001. A rapid spectroscopic technique for determining honey adulteration with corn syrup. Journal of Food Sci. 66(6): 787-792.
  176. Yang, H. and Irudayaraj, J. 2001. Rapid determination of olive pomace oil adulteration in extra virgin oil using NIR, FTIR, and FT-Raman techniques. Journal of American Oil Chemists Society 78: 889-895.
  177. Cho, B. and Irudayaraj, J. 2001. Acoustic sensor fusion approach for rapid measurement of modulus and hardness of cheddar cheese. Applied Engineering in Agriculture. 17(6): 827-832.
  178. Irudayaraj, J., Sivakesava, S., Kammath, S., and Yang, H. 2001. Monitoring chemical changes in some foods using Fourier transform photoacoustic spectroscopy. Journal of Food Science 66(9):1416-1421.
  179. Ranjan, R., Irudayaraj, J., and Jun, S. 2001. Simulation of infrared drying process. Drying Technology. 20(2) 363-379.
  180. Ranjan, R., Irudayaraj, J, Mahaffy, J. 2001. Modeling simultaneous heat and mass transfer using the control volume method. Journal of Numerical Heat Transfer. Part B, 41:1-15.
  181. Ranjan, R., Irudayaraj, J., and Jun, S. 2001. Three-dimensional control volume approach to modeling heat and mass transfer in food materials. Transactions of the ASAE. 44(6): 1975-1982.
  182. Yang, H. and Irudayaraj, J. 2000. Depth profiling Fourier transform analysis of cheese package using generalized two-dimensional photoacoustic correlation spectroscopy. Transactions of the ASAE 43(4):153-961.
  183. Sivakesava, S. and Irudayaraj, J. 2000. Determination of sugars in aqueous mixture using mid-infrared spectroscopy. Applied Engineering in Agriculture 16(5):543-550.
  184. Yang, H. and Irudayaraj, J. 2000. Depth profiling of a heterogeneous food-packaging model using step-scan Fourier transform infrared photoacoustic spectroscopy. Journal of Food Engineering. 55: 25-33.
  185. Cho, Y. and Irudayaraj, J. 2000. Computerization of manufacturing processes and information technology in food industry. Food Science and Industry 33(1):13-19.
  186. Sivakesava, S. and Irudayaraj, J. 2000. Quality analysis of potato chips using photoacoustic FTIR spectroscopy. Journal of Food Science. 80(12):1805-1810.
  187. Irudayaraj, J. and Yang, H. 2000. Analysis of cheese using step-scan Fourier transform infrared photoacoustic spectroscopy. Applied Spectroscopy 54(4):595-600.
  188. Yang, H. and Irudayaraj, J. 1999. Characterization of semi-solid fats and edible oils using Fourier transform infrared photoacoustic spectroscopy. Journal of American Oil Chem. Soc. 77(3):292-295.
  189. Yang, H. and Irudayaraj, J. 1999. Estimation of particle size by FTIR DRIFT and PAS. Particulate Science and Technology an International Journal 17(4): 269-282.
  190. Bargale, P.C., Wulfsohn, D., Irudayaraj, J, Ford, R.J., and Sosulski, F.W. 1999. Modelling Oil Expression by Uniaxial Compression with Time-Varying Oilseed Properties. Journal of Agricultural Engineering Research 77(2):171-181.
  191. Irudayaraj, J. and Wu, Y. 1999. Numerical modeling of heat and mass transfer in starch systems. Transactions of the ASAE. Vol 42(2):449-455.
  192. Irudayaraj, J., Chen, M., and McMahon, D. 1999. Study of texture in cheddar cheese using Fourier transform spectroscopy. Canadian Agricultural Engineering Journal. 14(4): 253-258.
  193. Bargale, P.C., Ford, R.J., Wulfsohn, D., Irudayaraj, J, and Sosulski, F.W. 1999. Measurement of consolidation and permeability properties of extruded soy under mechanical pressing. Journal of Agricultural Engineering Research 74(2): 155-166.
  194. Bargale, P.C, Ford, R.J., Sosulski, F.W., Wulfsohn, D., and Irudayaraj, J. 1999. Mechanical oil expression from extruded soybean samples. J. American Oil Chemists Society, 76 (2):223-229.
  195. Chen, M. and Irudayaraj, J. 1998. A sampling technique for the analysis of cheese using FT-IR spectroscopy. Journal of Food Science. (63)1:96-99.
  196. Chen, M., Irudayaraj, J., and McMahon, D. 1998. Examination of full-fat and reduced-fat cheddar cheese during ripening using FTIR spectroscopy. J. Dairy Science. 81:2791-2797.
  197. Irudayaraj, J. and Wu, Y. 1998. Determination of heat and mass transfer properties in starch based systems. Journal of Food Science 64(2):323-327.
  198. Ghazanfari, A., Wulfsohn, D. and Irudayaraj, J. 1998. Machine vision grading of Pistachio nuts using gray-level histograms. Canadian Journal of Agricultural Engineering. (40)1:61-66.
  199. Ghazanfari, A. and Irudayaraj, J. 1997. A Fourier descriptor approach for grading Pistachio nuts. Journal of Agricultural Engineering Research. (68): 247-252.
  200. Ghazanfari, A., Kusalik. T., and Irudayaraj, J. 1997. A multi-structure neural network approach for classification. International Journal of Neural Systems. (1):55-61.
  201. Irudayaraj, J. and Wu, Y. 1996. Analysis and application of Luikov's heat, mass, and pressure transfer model to a capillary porous media. Drying Technology. Vol 14(3&4):803-824.
  202. Wu, Y. and Irudayaraj, J. 1996. Application of simultaneous heat, mass, and pressure equations to timber drying. Numerical Heat Transfer, Part A: Applns. 30(3):233-247.
  203. Ghazanfari, A., Irudayaraj, J., and Kusalik, T. 1996. Grading pistachio nuts using a neural network approach. Transactions of the ASAE. 39(6):2319-2324.
  204. Ghazanfari, A. and Irudayaraj, J. 1996. Two-dimensional image classification using string matching. Transactions of the ASAE. 39 (3):1197-1202.
  205. Wu, Y. and Irudayaraj, J. 1996. Heat, mass and pressure transfer studies in starch based food system. Journal of Food Process Engineering. 29:399-414.
  206. Irudayaraj, J. and Wu, Y. 1995. Effect of pressure on moisture transfer during moisture adsorption in barley during steeping. Drying Technology. 13(1&2):1603-1617.
  207. Liu, Q. and Irudayaraj, J. 1995. Finite element solution of a moving boundary value problem. Drying Technology. 13(1&2):99-123.
  208. Bargale, P.C. and Irudayaraj, J. 1995. Mechanical strength and rheological properties of barley. International Journal of Food Science and Technology. (30)5:609-623.
  209. Bargale, P.C., Irudayaraj, J., and Marquis, B. 1995. Studies on rheological behaviour of wheat and canola. Journal of Agricultural Engineering Research. (61):267-274.
  210. Irudayaraj, J. and Wu, Y. 1994. Finite element analysis of coupled heat, mass, and pressure transfer in porous materials. International Journal of Numerical Heat Transfer. 26(3):337-350.
  211. Bargale, P.C., Irudayaraj, J., and Marquis, B. 1994. Some mechanical properties and stress relaxation characteristics of lentils. Canadian Journal of Agricultural Engin. 36(4):247-254.
  212. Irudayaraj, J. and Haghighi, K. 1993. Stress analysis of viscoelastic materials during drying: I - Theory and finite element formulation. Drying Tech.: An Intl. Journal. 11(5):901-927.
  213. Irudayaraj, J., Haghighi, K. and Stroshine, R.L. 1993. Stress analysis of viscoelastic materials during drying: II - Application to grain kernels. Drying Technology. 11(5):929-959.
  214. Fasina, O., Irudayaraj, J. and Sokhansanj, S. 1993. Three dimensional finite element analysis of moisture sorption process in expanding alfalfa cubes. Journal of Agricultural Engineering Research. (56):337-352.
  215. Irudayaraj, J., Haghighi, K. and Stroshine, R.L. 1992. Finite element analysis of drying with application to cereal grains. Journal of Agric. Engineering Research. (53):1-21.
  216. Irudayaraj, J., Haghighi, K. and Stroshine, R.L. 1990. Non linear finite element analysis of coupled heat and mass transfer problems. Drying Technology. 8 (4):731-749.
  217. Haghighi, K., Irudayaraj, J., Stroshine, R.L. and Sokhansanj, S. 1990. Grain kernel drying simulation using the finite element method. Transactions of the ASAE 33(6):1957-1965.
  218. Wu, I P. and J. Irudayaraj. 1989. Sample size determination for evaluating drip irrigation systems. Transactions of ASAE 32(6):1961 1965.

Other submitted publications in review (as of 15th Oct 2014)

  1. Chowdhury, B., Chen, J., Liu, S., Lossie, A., and Irudayaraj, J. Effect of AZA on hydroxymethylation–exploring a novel effect. Scientific Reports (October 2014).
  2. Chowdhury, B., Kirchmaier, A., Thimmapuram, J., Arun, G., and Irudayaraj, J. 2013. Sequencing of 5-Hydroxymethylcytosine during myeloid differentiation in HL60 cells. Nucleic Acids Research.
  3. Liu, J., Cho, I-H., Cui, Y., and Irudayaraj. 2014. Second harmonic super-resolution microscopy for quantification of mRNA at single copy resolution. ACS Nano (September 2014)
  4. Zhou, Z. and Irudayaraj, J. 2014. Chromatin extraction and structure elucidation by nanoscale approaches. Epigenetics. (October, 2014)
  5. Chowdhury, B., Wang, Z., Seetharaman, A., Thimmapuram, J., Liu, Y., Lossie, A., and Irudayaraj, J. A study of alterations in DNA epigenetic modifications (5mC and 5hmC) and gene expression influenced by simulated microgravity in human lymphoblastoid cells. PLOS One. (Oct 2014)
  6. Il-Hoon Cho, Pushpak Bhandari, Manisit Das and Joseph Irudayaraj, SERS-assisted signal enhancement for detection of low amount of protein analyte based on lateral-flow immunoassay, Anal Chem.
  7. Cui, Y. and J. Irudayaraj, Understanding cells: quantitative analysis with advanced optics and nanomaterials, in preparation, WIREs Nanomedicine and Nanobiotechnology, (July, 2014)

Publications in Preparation (as of Nov 2014)

  1. Ren, W; Parker, Laurie L. and Irudayaraj J. SERS-based phosphorylation monitoring, JACS.
  2. Ren, W; Irudayaraj J. A unique detection method based on absorption spectrum for simple and ultra-sensitive of nitrate ion determination in water with amino group modified graphene oxide, Analytical Chemistry.
  3. Damayanti, N., Parker, L., Irudayaraj, J. Multiplex Fluroescence Lifetime Imaging of Kinase activity in Live cells with peptide biosensor Nature Chemical Biology.
  4. Cecon T. Mahapatra, Nur P Damayanti, Joseph Irudayaraj, Maria Sepulveda. Mechanotoxicity study of PFOA effect in mitochondria dysfunction with multiphoton Fluroescence Lifetime Imaging.
  5. Nur P Damayanti, Joseph Irudayaraj, Fluroescence Lifetime Imaging of Acetylation Biosensor in live cells reveal PCAF role in androgen insensitivity progression in prostate cancer , PNAS.
  6. Nur P Damayanti, Cecon T. Mahapatra, Maria Sepulveda, Joseph Irudayaraj, Multimodal and Multiparametric In-Vivo Imaging reveals TCE role in abnormal heart development and defective vasculogenesis of danio rerio. Toxicology.
  7. Cecon T. Mahapatra, Nur P Damayanti, Joseph Irudayaraj, Maria Sepulvida, Quantititave In-Vivo Fluorescence Lifetime Imaging reveal PFOA induced neuronal degeneration in Zebrafish. Toxicology.
  8. Roy Choudhury S, Cui Y, Narayanan A, Yernool D, Irudayaraj J (2014) Optogenetic interaction between TRF1 and DNA methyltransferase3A introduces alteration in telomere length through directed reversal of subtelomeric hypomethylation. (PNAS, August 2014)
  9. Roy Choudhury S, Lo CL, Cui Y, Zhou, Irudayaraj J (2014) Optogenetic tools to control the loci specific aberrant epigenetic status in neuronal stem cell. (Nature Communication, October 2014)
  10. Jing Liu, Yaowu Hu, Prashant Kumar, Mika Shalaginov, Alex Lagutchev, Vladimir Shalaev, Gary Cheng, and Joseph Irudayaraj, “On-Demand Multi-photon source from Opto-mechanical Nanoshaping of Hybrid Graphene-Nanodiamond Structures”. In Preparation, Nature Communication.
  11. Jing Liu, M. Y. Shalaginov, A. Lagutchev, V. M. Shalaev, and J. Irudayaraj, “Photochromic Effect of Single NV Centers investigated by Time-resolved Single Molecule Spectroscopy”. In Preparation, New Journal of Physics.
  12. Jing Liu, Yaowu Hu, Prashant Kumar, Gary Cheng, and Joseph Irudayaraj, “Enhanced Multi- photon Emission from CdSe/ZnS Quantum Dots decorated on Graphene”.
  13. Cui, Y., Jian Li, Sarah Wirbisky, Jennifer Freeman, Xianrui Yuan, J. Irudayaraj, Exploring the function and clinical implication of MBD3 in human Glioblastoma Multiforme, in preparation, Nature Medicine, (December, 2014)
  14. Bhandari P, Garg R, Goergen C, Irudayaraj J. 2014. Reversal of 5-mC hypomethylation in cancer hypoxia using oxygen nanobubbles. Theranostics.
  15. Bhandari P, Phillips E, Goergen C, Kim A, Ziaie B, Irudayaraj J. 2014. Ultrasound triggered delivery vehicle with targeted oxygen nanobubbles for theranostics. Nature Nanotechnology.
  16. Bhandari P, Garg R, Goergen C, Irudayaraj J. 2014. Contrast enhanced in vivo imaging and enhanced survival of pancreatic islets using oxygen nanoencapsulation. ACS Nano.
  17. Park JH1, Bhandari P1, Kim A, Irudayaraj J, Ziaie B. Transplantable glucose sensor using nanobubble encapsulated polymer hydrogel. To be decided (November 2014)
  18. Il-Hoon Cho, Basudev Chowdhury, and Joseph Irudayaraj, Quantification of 5-formylcytosine and 5-carboxylcytosine based on solid phase assay via site-specific chemical modification, Analytical Chemistry.
  19. Il-Hoon Cho, Arun K. Bhunia and Joseph Irudayaraj, Rapid and multiple detection of foodborne pathogens by lateral-flow immunochromatography via nanoparticle-assisted enzyme signal enhancement, Analytical Chemistry.
  20. Wang, XL, Cui Y, Cho II-Hoon. 2014. Hyperspectral molecular imaging of surface marker, mRNA, and multiple epigenectic markers using immunolabeled plasmonic nanoparticles. Nano Letters.

Books and Chapters

Books

  1. Irudayaraj, J. 2012. Biomedical Nanosensors. Taylor and Francis Publishers. (12 Chapters) (Published in December 2012).
  2. Kouassi, G. and Irudayaraj, J. 2012. Magnetic Nanostructures: Basics to Applications. Pan Stanford Publishing. (10 Chapters). (In Progress - Scheduled for completion in Fall 2013).
  3. Irudayaraj, J. and Christoph, R. 2008. Nondestructive sensing for food quality. IFT Press, Blackwell Publishing Professional, Ames, IA 50014. (~365 pages).
  4. Jun S. and Irudayaraj, J. (Editors) 2008. Food Processing Operations Modeling II (2nd Edition). Marcel Dekker Inc., NY (~375 pages).
  5. Irudayaraj, J. (Editor) 2001. Food Processing Operations Modeling I. Marcel Dekker Inc., NY.

Selected Chapters in books. (since 2005)

  1. Craig, A.P., Irudayaraj, J., Franca, A. 2014. Vibrational Spectroscopy for food quality and safety screening. In: Arun K. Bhunia; Moon S. Kim; Chris R. Taitt. High throughput screening for food safety assessment: biosensor technologies, hyperspectral imaging and practical applications.
  2. Craig, A.P., Franca, A., and Irudayaraj, J. 2013. Pattern recognition in spectroscopic analysis. Conventional methods and future directions. In: Pattern Recognition: Practices, Perspectives and Challenges. Nova Publishers. Taylor and Francis. (In Press).
  3. Kadam, U., Lossie, A., Schulz, B. and Irudayaraj, J. 2012. Gene expression analysis using conventional and imaging methods In Nucleic Acids Nanotechnology in Medicine. Springer Publications Inc. (Erdmann, V.A., Barciszewski J., eds.), (8): 141-162
  4. Lee, S., Craig, A.P., Kadam, U., and Irudayaraj, J. 2012. In-vivo biodetection using Raman spectroscopy In Biosensors based on Nanomaterials and Nanodevices. CRC Press, Taylor and Francis. (In Press)
  5. Craig, A.P., Franca, A., and Irudayaraj, J. 2013. Surface enhanced Raman spectroscopy applied to Food Safety. Annual Review of Food Science and Technology, Vol 4. 369-80.
  6. Kahyaoglu, L. and Irudayaraj, J. 2013. Detection of Foodborne virus In Advances in microbial food safety. Chap 11 (pp. 202-218) Woodhead Pub. Inc. (ISBN-13: 978085709438 4; 560 pages)
  7. Kouassi, G., Yu, C., Lan, S. and Irudayaraj, J. 2011. Synthesis and preparation of magnetic and gold-coated magnetic nanoparticles. (Chap 2). Part 1. Fabrication and synthesis of inorganic particles. Nanoparticles in Biology and Medicine: Methods and Applications. Humana Press (Springer Science), USA.
  8. Kouassi, G., Yu, C., Lan, S. and Irudayaraj, J. 2011. Functionalization and biological and medical applications of magnetic and gold-coated magnetic nanoparticles (Chap 3). Part 1. Fabrication and synthesis of inorganic particles. Nanoparticles in Biology and Medicine: Methods and Applications. Humana Press (Springer Science), USA.
  9. Kizil, R. and Irudayaraj, J. 2011. FTIR photoacoustic spectroscopy. Vibrational Spectroscopy Section. Encyclopedia of biophysics (Editor Roberts). Springer Verlag. (5 pages).
  10. Jalilian, R., Jauregui, L., Lee, K, Chen, Y., and Irudayaraj, J. 2010. Graphene for biosensing applications in Biomedical Nanosensors (Ed. Irudayaraj). (20 pages).
  11. Yu, C. and Irudayaraj, J. 2007. Sensitivity and selectivity limits of multiplex nanoSPR biosensor assays. Ed. Nagarajan in Nanoparticles: Synthesis, passivation, Stabilization, and Functionalization. ACS Books. American Chemical Society.
  12. Subramanian, A., and Irudayaraj, J. 2005. Biosensors for pathogen detection in food. Encyclopedia of Agriculture, Food, and Biological Engin. Taylor and Francis Group. NY.
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