Dr. Joseph Irudayaraj
 

Peer Reviewed Manuscripts (career refereed publications ~200)

Selected publications most relevant (2005 - present) from a total of over 168 publication

  1. Jae-Sung, K., Ravindranath, S., Aloke, K., Irudayaraj, J. and Wereley, S. 2012. Opto-electrokinetic manipulation technique for high-performance on-chip biological assay. Lab on Chip. (Accepted)
  2. Liu, J. and Irudayaraj, J. 2012. Second Harmonic Generation Correlation Spectroscopy for Single Molecule Experiments. Optics Express. (In Press)
  3. Ravindranath, S., Kadam, U., and Irudayaraj, J. 2012. Intracellularly grown gold nanoislands as SERS substrates for monitoring chromate, sulfate and nitrate localization sites in remediating bacteria biofilms by Raman chemical imaging. Analytica Chimica Acta. 745:1-9. (Cover article).
  4. Stephen, K., Nakatsu, C., and Irudayaraj, J. 2012. Surface Enhanced Raman Spectroscopy (SERS) for the discrimination of Arthrobacter strains based on variations in cell surface composition. Analyst. 137: 4280-4286.
  5. Dong, C. and Irudayaraj, J. 2012. Hydrodynamic Size-Dependent Cellular Uptake of Aqueous QDs Probed by Fluorescence Correlation Spectroscopy. J. Physical Chem. C. (Accepted)
  6. Chen, J., Miller, A., Kirchmaier, A., and Irudayaraj, J. 2012. Single Molecule Tools Elucidate H2A.Z Nucleosome Composition. J. Cell Science. (In Press JCS101592.3d, available online)
  7. Wang, Y., Book, B., and Irudayaraj, J. 2012. Folic acid protected doxorubicin coated silver nanocarriers for targeted drug delivery. J. Biomedical Nanotechnology. 8(5):751-759.
  8. Book, B. Wang, Y., and Irudayaraj, J. 2012. Multifunctional gold nanorods for targeted drug delivery using 2-photon excitation. Euro Journal of Medicinal Chemistry. 48:330-337.
  9. Mura, S., Greppi, G., Marongiu, M., Roggero, P., Ravindranath, S., Mauer, L., Schibeci, N., Perria, N., Piccinini, M.,  Innocenzi, P., and Irudayaraj, J. 2012. FTIR nanobiosensors for Escherichia coli detection. 2012. Beilstein J. Nanotechnology. 3:885-92.
  10. Wang, Y., Chen, J., and Irudayaraj, J. 2011. Nuclear targeting dynamics of gold nanoclusters for enhanced therapy of HER2+ breast cancer. ACS NANO. 5(12):9718-9725.
  11. Guo, C., Book, B., and Irudayaraj, J. 2011. Protein-directed reduction of Graphene oxide and intracellular imaging. Chemical Communications. 47(47):12658-12660
  12. Lee, K., Drachev, V., and Irudayaraj, J. 2011. DNA-Gold Nanoparticle Networks Grown at Cell Surface Marker Sites: Application in Diagnostics of Cancer Stem Cells. ACS NANO (Article ASAP DOI: 10.1021/nn1030862).
  13. Wang, Y. and Irudayaraj, J. 2011. A SERS DNAzyme Biosensor for Lead Ion Detection. Chemical Communications (accepted).
  14. Chen, J., Nag, S., and Irudayaraj, J. 2011. Single molecule in vivo analysis of Toll-like 9 and CpG DNA interaction. PLoS ONE (In Press).
  15. Ravindranath, S., Henne, T., Thompson, D., and Irudayaraj, J. 2011. Intracellular Bioreduction of Chromate-Decorated Gold Nanoparticles by Shewanella oneidensis MR-1 by Raman Chemical Imaging. ACS NANO. 5(6):4729-36.
  16. Guo, C. and Irudayaraj, J. 2011. Fluorescent Ag Clusters via a Protein-directed Approach as a Hg(II) Ion Sensor. Analytical Chemistry (accepted).
  17. Ravindranath, S., Wang, Y., Irudayaraj, J. 2010. SERS driven Cross-platform based multiplex pathogen detection. Sensors & Actuators: B. Chemical. (Final proof is available online doi:10.1016/j.snb.2010.12.005).
  18. Wang, Y., Ravindranath, S., and Irudayaraj, J. 2010. Separation and detection of multiple pathogens in a food matrix by SERS nano probes. Analytical and Bioanalytical Chemistry. (Final proof available online, ISSN: 1618-2650)
  19. Ravindranath, S., Henne, K., Thompson, D., and Irudayaraj, J. 2011. Surface-enhanced Raman Imaging of Intracellular Bioreduction of Chromate in Shewanella oneidensis. PLoS ONE (Published http://dx.plos.org/10.1371/journal.pone.0016634).
  20. Panchapakesan, B., Seth R., Book, B. and Irudayaraj, J. 2011. Gold nanoprobes for theragnostics and diagnostics. Journal of Nanomedicine (Invited, In Press)
  21. Wang, Y., Ravindranath, S., and Irudayaraj, J. 2010. Separation and detection of multiple pathogens in a food matrix by SERS nano probes. Analytical and Bioanalytical Chemistry. 399 (3):1271-8.
  22. Rout, C., Kumar, A., Xiong, G., Irudayaraj, J., and Fisher, T. 2010. Au nanoparticles on graphitic petal arrays for surface-enhanced Raman spectroscopy. Applied Physics Letters. (vol. 97, art. no. 133108, 2010.)
  23. Book, B., Chen, J., and Irudayaraj, J. 2010. Quantification of receptor targeting aptamer binding characteristics using single-molecule spectroscopy. Biotechnology and Bioengineering (Online DOI: 10.1002/bit.23043).
  24. Wang, Y., Seebald, J., Szeto, D., and Irudayaraj, J. 2010. Biocompatibility and biodistribution of surface-enhanced Raman scattering nanoprobes in zebrafish embryos in vivo and multiplex imaging. ACS NANO. 4(7):4039-53.
  25. Chen, J. and Irudayaraj, J. 2010. Fluorescence lifetime cross correlation spectroscopy resolves EGFR and antagonist interaction in live cells. Analytical Chemistry. 82(15):6415-21.
  26. Wang, Y., Lee, K., and Irudayaraj, J. 2010. Silver nanosphere SERS probes for sensitive identification of pathogens. J. Physical Chemistry C. 114(39): 16122-16128.
  27. Miller, A., Takasuka, T., Chen, J., Kaufman, P., Jacobi, J., Irudayaraj, J., and Kirchmaier, A. 2010. PCNA Is Required for Cell-Cycle Regulated Silent Chromatin on Replicated and Nonreplicated Genes. J. Biological Chemistry. 285(45):35142-54.
  28. Nag, S., Chen, J., Maiti, S., and Irudayaraj, J. 2010. Measurement of the attachment and assembly of small amyloid-beta oligomers on live cell membranes at physiological conditions using single molecule tools. Biophysical Journal. 99(6):1969-75.
  29. Wang, Y., Lee, K., and Irudayaraj, J. 2010. SERS aptasensor from nanorod-nanopaticle junction for protein detection. Chem. Communications. 46(4):613-615.
  30. Chen, J. and Irudayaraj, J. 2009. Quantitative investigation of compartmentalized dynamics of ErbB2 targeting gold nanorods in live cells by single molecule spectroscopy. ACS NANO. 3:4071-4079. (Featured in NIH-NCI Nanotech. alliance, January News and Science Daily)
  31. Wang, C. and Irudayaraj, J. 2009. Multifunctional magnetic-Optical nanoparticle probes for simultaneous detection, separation, and thermal ablation of multiple pathogens. Small. 2(6):283-289.
  32. Kumar, V. and Irudayaraj, J. 2009. SERS in salt wells. Chemphyschem. 10(15):2670-2673.
  33. Sun, L. and Irudayaraj, J. 2009. PCR-free quantitation of splice variants in Cancer Gene using Surface Enhanced Raman Spectroscopy. J. Phys. Chem. 113:5980-5983.
  34. Sun, L. and Irudayaraj, J. 2009. Quantitative Surface Enhanced Raman for gene expression estimation, Biophysical Journal. 96:4609-16.
  35. Wang, C. Chen, J. Talavange, T. and Irudayaraj, J. 2009. Gold nanorod/Fe3O4 nanoparticle “Nano-Pearl-Necklaces” for simultaneous targeting, dual-mode imaging, and photothermal ablation of cancer cells. Angewandte Chemie, 121(15):2797-2801.
  36. Chen, J., Wang, C., and Irudayaraj, J. 2009. Ultrasensitive on-step immunoassay in blood serum using gold nanoparticle probes by single molecule spectroscopy. Biomedical Optics Letters, 14(4). 040501.
  37. Lee, K. and Irudayaraj, J. 2009. Periodic and dynamic 3-D gold nanoparticle-DNA network structures for surface-enhanced raman spectroscopy-based quantification. J. Phys. Chem. C. 113:5980-5983.
  38. Ravindranath, S., Mauer, L., Chitrita, D., and Irudayaraj, J. 2009. Biofunctionalized magnetic nanoparticle integrated mid-infrared pathogen sensors for food matrices. Analytical Chemistry, 81(8):2840-2846.
  39. Vidi, P., Chen, J., Irudayaraj, J. and Watts, V. 2008. Higher-order Adenosine A-2A receptor oligomers revealed by BiFC-FRET and FLIM. FEBS Letters, 582(29):3985-3990.
  40. Yu, C., Jacob, R., Ritchie, K., Prasad, N., Irudayaraj, J. 2008. Receptor Overexpression or Inhibition Alters Cell Surface Dynamics of EGF-EGFR interaction: New Insights from Real-time Single Molecule Analysis. Biochemical and Biophysical Res. Communication, 378(3):376-382.
  41. Bakker, R., Yuan, H., Liu, Z., Pedersen, R., Boltasseva, A., Chen, J., Irudayaraj, J., Kildishev, A., Drachev, V., and Shalaev, V. 2008. Nanoantenna induced fluorescence enhancement: dipolar coupling and reduced lifetimes. New Journal of Physics, 10:125022.
  42. Sun, L., Yu, C. and Irudayaraj, J. 2008. Raman multiplexers for alternative gene splicing. Analytical Chemistry. 80(9):3342-9.
  43. Wang, C. and Irudayaraj, J. 2008. Gold nanorod probes detects multiple pathogens. Small. 4(12):2204-2208.
  44. Shamsaie, A., Heim, J. and Irudayaraj, J. 2008. Quantification of MBA in living cell by surface enhanced raman spectroscopy. Chemical Physics Letters, 461:131-135.
  45. Varghese, L., Sinha, R., and Irudayaraj, J. 2008. Single molecule kinetic investigations of protein association and dissociation using fluorescence cross-correlation spectroscopy. Analytica Chimica Acta. 625(1):103-109.
  46. Sarkar, T. and Irudayaraj, J. 2008. Carboxyl coated magnetic nanoparticles for mRNA isolation and extraction of supercoiled plasmid DNA. Analytical Biochemistry. 379:130-132.
  47. Sun, L., Yu, C., and Irudayaraj, J. 2007. Surface enhanced Raman scattering based nonfluorescent probes for multiplex detection. Analytical Chemistry, 79(11):3981-3988. (Selected as a featured article “No-glow tags for Raman Spectroscopy” in June 1, 2007 issue)
  48. Shamsaie, A., Irudayaraj, J. 2007. Intracellularly Grown Gold Nanoparticles (IGAuN) as Potential SERS Probes. Biomedical Optics. 12(2):020502-1-3. (Most frequently downloaded paper on the SPIE digital library, 2008)
  49. Mizrach, A., Z. Schmilovitch, R. Korotic, J. Irudayaraj, and R. Shapira. 2007. Yeast detection in apple juice using Raman spectroscopy. Transactions of ASABE 50(6):1-8. (Superior paper Award, ASABE 2008 International meeting)
  50. Yu, C. Naksharti, H., and Irudayaraj, J. 2007. Identity profiling of cell surface markers by multiplex gold nanorod probes. Nano Letters, 7(8): 2300-2306.
  51. Yu C, and Irudayaraj J. 2007. A multiplex biosensor using gold nanorods. Analytical Chemistry. 79(2): 572-579. [2nd Most cited article in Analytical Chemistry in 2007 and 5th Most cited as of March 2008]
  52. Yu, C. and Irudayaraj, J. 2007. Sensitivity and Selectivity limits of multiplex nanoSPR biosensor assays. Biophysical Journal. 93:3684-3692.
  53. Yu, C., Varghese, L., and Irudayaraj, J. 2007. Surface modification of CTAB capped gold nanorods to make molecular probes. Langmuir, 23: 9114-9119.
  54. Kouassi, G., Wang, P., Sreevatsan, S., Irudayaraj, J. 2007. Detection of prion protein on streptavidin-aptamer mediated magnetic and gold-coated magnetic nanoparticles. Biotech Progress 23(5):1239-44.
  55. Yu, C., Gestl, E., Eckert, K., Allara, D., Irudayaraj, J. 2006. Characterization of Human Breast Epithelial Cells by Confocal Raman Microspectrometry. J. Cancer Diagnosis and Prevention, 30(6):1-10
  56. Beullens, K.,  Kirsanov, D., Irudayaraj, J., Rudnitskaya, A., Legin, A., Nicolai, B., and Lammertyn, J. 2006. The electronic tongue and ATR-FTIR for rapid detection of sugars and acids in tomatoes. Sensors and Actuators, B: Chemical, v 116, n 1-2, Jul 28, 2006, p 107-115
  57. Gupta, M., Irudayaraj, J., Schmilovitch, Z., Mizrach, A. 2006. Quantification of foodborne pathogens in different food matrices using FTIR and artificial neural networks. Trans of ASABE 49(5):1249-1256.
  58. Kouassi, G. and Irudayaraj, J. 2006. Magnetic and gold-coated magnetic particles as a DNA sensor. Analytical Chemistry. 78(10):3234-3241. [Top 10 most accessed article in 2006 in Analytical Chemistry (ranked 6th in the list); Ranked in the Top 100 (11th in the list) of Nanomedicine publications for 2006 by Ion Channel media group]
  59. Kouassi, G. and Irudayaraj, J. 2006. A nanoparticle-based immobilization assay for prion-kinetics assay. Journal of Nanobiotechnology. 48(8):1-10. [Accessed 2026 times]
  60. Kizil, R. and Irudayaraj, J. 2006. Discrimination of irradiated starch gels using FT-Raman spectroscopy and chemometrics. J. Agric. and Food Chemistry, 54(1):13-18. [Most accessed article in Jan – March 2006]
  61. Yu, C. and Irudayaraj, J. 2006. Detection and identification of pathogenic microorganisms in mixed cultures by FTIR spectroscopy. Trans of ASABE, 49(5):1623-1632. [Honorary mention certificate at the 2007 ASABE meeting).
  62. Waswa, J., Debroy, C., and Irudayaraj, J. 2006. Rapid detection of Salmonella enteritidis and Escherichia coli using the BiacoreTM Surface Plasmon Resonance biosensor. J. Food Process Engineering, 29: 373-385.
  63. Waswa, J., Debroy, C., and Irudayaraj, J. 2006. Rapid detection of Salmonella enteritidis and Escherichia coli using the BiacoreTM Surface Plasmon Resonance biosensor. J. Food Process Engineering, 29: 373-385.
  64. Yu, C., Ganjoo, A., Jain, H., Pantano, C., and Irudayaraj, J. 2005. Towards a mid-IR biosensor: Detection and fingerprinting of pathogens on chalcogenide films. Analytical Chem. 78(8):2500-2506.
  65. Ganjoo, A., Jain, H, Song, R., Yu, C., Ryan, J., Irudayaraj, J., Ding, Y., and Pantano, C. 2005. Chalcogenide Glass Waveguides for IR Evanescent Wave Sensors. J. Noncrystalline Solids 352:584-588.
  66. Swaminathan, A., Irudayaraj, J., and Ryan, T. 2004. Comparison of mono and dithiol surfaces on surface plasmon resonance biosensors for detection of Staphylococcus aureus.. Sensors and Actuators B, 114:192-198.
  67. Schmilovitch, Z., Mizrach, A., Kritzman, G., Korotic, R., Irudayaraj, J., and Debroy, C. 2005. Detection of bacteria with low resolution raman spectroscopy. Trans of ASAE. 48(5):1843-50.
  68. Vaseashta, A. and Irudayaraj, J. 2005. Nanostructured and nanoscale devices and sensors. Journal of Optoelectronics and Advanced Materials. 7(1):35-42.
  69. Kouassi, G., Irudayaraj, J., and McCarty, G. 2005. Examination of Cholesterol oxidase attachment to magnetic nanoparticles. J. Nanobiotechnology. (3)1:1-9. [The 3rd most accessed article (all time) in the Journal of Biomagnetic Research and Technology with a download access hit of 13,234.
  70. Kouassi, G., Irudayaraj, J., and McCarty, G. 2005. Activity of glucose oxidase functionalized onto iron nanoparticles. J. Biomagnetism and Technology. 3:1.
  71. Swaminathan, A., Irudayaraj, J., and Ryan, T. 2005. Self-assembled monolayer-based surface plasmon immunosensor for detection of E. coli O157:H7. Biosensors and Bioelec. 21(7):998-1006.
  72. Yu, C. and Irudayaraj, J. 2005. Spectroscopic characterization of microorganisms by FTIR microspectroscopy. J. Biopolymers. 77(6):368-377
  73. Lammertyn, J., Verboven, P., Veraverbeke, E., Vermeir, S., Irudayaraj, J., and Nicolai, B. 2005. Analysis of fluid flow and reaction kinetics in a flow injection analysis biosensor. Sensors and Actuators B. 114(2):728-736.
  74. Mura, S., Corrias, F., Stara, G., Piccinini, M., Secchi, N., Marongiu, D., Innocenzi., P., Irudayaraj, J., and Greppi, G. 2011. Innovative composite films of chitosan, methylcellulose and nanoparticles. J. Food Science. (accepted)
  75. Gupta M., Irudayaraj, J., Debroy, C., Schmilovitch, Z., Mizrach, A. 2005. Detection and Differentiation of Food Pathogens using FTIR and Artificial Neural Networks. Trans. of ASAE. 48(5):1889-1892.
 
 
 
 
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