Publications

2016

  1. Beckham, Gregg T.; Johnson, Christopher W.; Karp, Eric M; Salvachúa, Davinia; and Vardon, Derek R Opportunities and challenges in biological lignin valorization, Curr. Opin. Biotechnol., 42, 40-53 (2016). [10.1016/j.copbio.2016.02.030]
  2. Dugard, Christopher K.; Mertz, R. A.; Rayon, Catherine; Mercadante, Davide; Hart, Christopher; Benatti, M. R.; Olek, Anna T; SanMiguel, Phillip J; Cooper, Bruce R.; Reiter, Wolf-Dieter; McCann, Maureen C; and Carpita, Nicholas C The cell wall arabinose-deficient Arabidopsis thaliana mutant murus5 encodes a defective allele of Reversibly Glycosylated Polypeptide2, Plant Phys., 171, 1905-1920 (2016). [10.1104/pp.15.01922]
  3. Hanyu; Owen, Ben C; Haupert, L. M.; Easton, Mckay; Hosseinaei, Omid; Bozell, Joseph J; Nash, John J; and Kenttämaa, Hilkka I A fundamental tandem mass spectrometry study of the collision-activated dissociation of small deprotonated molecules related to lignin., ChemSusChem, 9, 3513-3526 (2016). [10.1002/cssc.201600678]
  4. Hewetson, Barron; Zhang, Ximing; and Mosier, Nathan S Enhanced acid-catalyzed biomass conversion to hydroxymethylfurfural following cellulose solvent- and organic solvent-based lignocellulosic fractionation pretreatment, Energy & Fuels, 30, 9975-9977 (2016). [10.1021/acs.energyfuels.6b01910]
  5. Key, Rebecca E.; and Bozell, Joseph J Progress toward lignin valorization via selective catalytic technologies and the tailoring of biosynthetic pathways., ACS Sustainable Chem. Eng., 4, 5123-5135 (2016). [10.1021/acssuschemeng.6b01319]
  6. Klein, Ian; Marcum, C. L.; Kenttämaa, Hilkka I; and Abu-Omar, Mahdi M Mechanistic investigation of the Zn/Pd/C catalyzed cleavage and hydrodeoxygenation of lignin, Green Chem., 18, 2399-2405 (2016). [10.1039/C5GC01325A]
  7. Knott, Brandon C.; Crowley, Michael F.; Himmel, Michael E.; Zimmer, Jochen; and Beckham, Gregg T. Simulations of cellulose translocation in the bacterial cellulose synthase suggest a regulatory mechanism for the dimeric structure of cellulose, Chem. Sci., 7, 3108-3116 (2016). [10.1039/C5SC04558D]
  8. Lin, Chien-Yuan; Jakes, Joseph E.; Donohoe, Bryon S.; Ciesielski, Peter N.; Yang, Haibing; Gleber, S Charlotte; Vogt, Stefan; Ding, S. Y.; Peer, W. A.; Murphy, A. S.; McCann, Maureen C; Himmel, Michael E.; Tucker, Melvin P; and Wei, Hui Directed plant cell wall accumulation of iron: Embedding co-catalyst for efficient biomass conversion, Biotechnology for Biofuels, 9, 225 (2016). [10.1186/s13068-016-0639-2]
  9. Liu, Jiliang; Kim, Jeong Im; Cusumano, Joanne C; Chapple, Clint C. S.; Venugopalan, Nagarajan; Fischetti, Robert F; and Makowski, Lee The impact of alterations in lignin deposition on cellulose organization of the plant cell wall., Biotech. For Biofuels, 9, 126-143 (2016). [10.1186/s13068-016-0540-z]
  10. Luo, Hao; Klein, Ian; Jiang, Yuan; Zhu, Hanyu; Liu, Baoyuan; Kenttämaa, Hilkka I; and Abu-Omar, Mahdi M Total utilization of miscanthus biomass, lignin and carbohydrates, using earth abundant nickel catalyst, ACS Sustainable Chem. Eng, 4, 2316–2322 (2016). [10.1021/acssuschemeng.5b01776]
  11. Mukarakate, Calvin; Mittal, Ashutosh; Ciesielski, Peter N.; Budhi, Sridhar; Thompson, Logan; Iisa, Kristiina; Nimlos, Mark R.; and Donohoe, Bryon S. The influence of crystal allomorph and crystallinity on the products and behavior of cellulose during fast pyrolysis, ACS Sustainable Chem. Eng., 4, 4662–4674 (2016). [10.1021/acssuschemeng.6b00812]
  12. Njiojob, Costyl N.; Bozell, Joseph J; Long, Brian K.; Elder, Thomas; Key, Rebecca E.; and Hartwig, William T. Enantioselective syntheses of lignin models: An efficient synthesis of β-O-4 dimers and trimers using the Evans Chiral Auxiliary, Chem. Eur. J., 22, 12506–12517 (2016). [10.1002/chem.201601592]
  13. Saha, Basudeb ; Klein, Ian; Parsell, T. H.; and Abu-Omar, Mahdi M Catalytic hydrodeoxygenation of lignin model compounds, Green Chemistry and Sustainable Technology Schlaf, Marcel, Zhang, Zonghcao (Eds.) Springer, Singapore, 119-129 (2016). [10.1007/978-981-287-769-7]
  14. Shi, Jian; Pattathil, Sivakumar; Anderson, Nickolas A; Kim, Jeong Im; Venkatachalam, Sivasankari; Hahn, Michael G.; Chapple, Clint C. S.; Simmons, Blake A; and Singh, Seema Impact of engineered lignin composition on biomass recalcitrance and ionic liquid pretreatment efficiency, Green Chem., 18, 4884-4895 (2016). [10.1039/C6GC01193D]
  15. Shuai, Li; Amiri, Masoud Talebi ; Questell-Santiago, Ydna M. ; Héroguel, Florent; Li, Yanding; Kim, Hoon; Meilan, Richard; Chapple, Clint C. S.; Ralph, John; and Luterbacher, Jeremy S. Formaldehyde stabilization facilitates lignin monomer production during biomass depolymerization, Science, 354, 329-333 (2016). [10.1126/science.aaf7810]
  16. Vardon, Derek R; Rorrer, Nicholas A.; Settle, Amy E.; Johnson, Christopher W.; Menart, Martin J.; Cleveland, Nicholas S.; Ciesielski, Peter N.; Steirer, K. Xerxes; Dorgan, John R.; and Beckham, Gregg T. cis,cis-Muconic acid: separation and catalysis to bio-adipic acid for nylon-6,6 polymerization , Green Chem., 84, 5869–5875 (2016). [10.1039/C5GC02844B]
  17. Viell, Jörn; Inouye, Hideyo; Szekely, Noemi K; Frielinghaus, Henrich; Marks, Caroline; Wang, Yumei; Anders, Nico ; Spiess, Antje C; and Makowski, Lee Multi-scale processes of beech wood disintegration and pretreatment with 1-ethyl-3-methylimidazolium acetate/water mixtures, Biotechnology for Biofuels, 9, 7 (2016). [10.1186/s13068-015-0422-9]
  18. Yang, Haibing; Wei, Hui; Ma, Guojie; Antunes, Mauricio; Vogt, Stefan; Cox, Joseph; Zhang, Xiao; Xiu, Xiping; Bu, Lintao; Gleber, S Charlotte; Carpita, Nicholas C; Makowski, Lee; Himmel, Michael E.; Tucker, Melvin P; McCann, Maureen C; Murphy, A. S.; and Peer, W. A. Cell wall targeted in planta iron accumulation enhances biomass conversion and seed iron concentration in Arabidopsis and rice., Plant Biotechnol. J., 14, 1998–2009 (2016). [10.1111/pbi.12557]
  19. Yohe, Sara; Choudhari, Harshavardhan; Mehta, Dhairya; Dietrich, Paul J.; Detwiler, Michael D.; Akatay, M. Cem; Stach, Eric A.; Miller, Jeffrey T; Delgass, W. Nicholas; Agrawal, Rakesh; and Ribeiro, Fabio H High-pressure vapor-phase hydrodeoxygenation of lignin-derived oxygenates to hydrocarbons by a PtMo bimetallic catalyst: Product selectivity, reaction pathway, and structural characterization., Journal of Catalysis, 344, 535–552 (2016). [10.1016/j.jcat.2016.10.009]
  20. Zhang, Ximing; Murria, Priya; Jiang, Yuan; Xiao, Weihua; Kenttämaa, Hilkka I; Abu-Omar, Mahdi M; and Mosier, Nathan S Maleic acid and aluminum chloride catalyzed conversion of glucose to 5-(hydroxymethyl) furfural and levulinic acid in aqueous media., Green Chem., 18, 5219-5229 (2016). [10.1039/C6GC01395C] Zhang, Yan; Max, Joann P.; Marcum, Christopher L.; Luo, Hao; Abu-Omar, Mahdi M; and Kenttämaa, Hilkka I Identification of the phenol functionality in deprotonated monomeric and dimeric lignin degradation products via tandem mass spectrometry based on ion-molecule reactions with diethylmethoxyborane, J. Am. Soc. Mass Spectrom., 27, 1813-1823 (2016). [10.1007/s13361-016-1442-9]
  21. Zhao, Shuai; Wei, Hui; Lin, Chien-Yuan; Zeng, Yining; Tucker, Melvin P; Himmel, Michael E.; and Ding, Shi-You Burkholderia phytofirmans inoculation-induced changes on the shoot cell anatomy and iron accumulation reveal novel components of Arabidopsis-endophyte interaction that can benefit downstream biomass deconstruction., Frontiers in Plant Science, 7, 24 (2016). [10.3389/fpls.2016.00024]
  22. Zhu, Hanyu; Max, Joann; Marcum, Christopher L.; Luo, Hao; Abu-Omar, Mahdi M; and Kenttämaa, Hilkka I Identification of the phenol functionality in deprotonated monomeric and dimeric lignin degradation products via tandem mass spectrometry based on ion-molecule reactions with diethylmethoxyborane, J. Am. Soc. Mass Spectrom., 27, 1813-1823 (2016). [10.1007/s13361-016-1442-9]

2015

  1. Anderson, Nickolas A; Bonawitz, Nicholas D; Nyffeler, Kayleigh; and Chapple, Clint C. S. Loss of ferulate 5-hydroxylase leads to Mediator-dependent inhibition of soluble phenylpropanoid biosynthesis in Arabidopsis, Plant Physiology, 169, 1557-1567 (2015). [10.1104/pp.15.00294]
  2. Anderson, Nickolas A; Tobimatsu, Yuki; Ciesielski, Peter N; Ximenes, Eduardo; Ralph, John; Donohoe, Bryon S; Ladisch, Michael; and Chapple, Clint C. S. Manipulation of guaiacyl and syringyl monomer biosynthesis in an Arabidopsis cinnamyl alcohol dehydrogenase mutant results in atypical lignin biosynthesis and modified cell wall structure, Plant Cell, 8, 2195-2209 (2015). [10.1105/tpc.15.00373]
  3. Barnes, Craig E; Sharp, Katherine; Albert, Austin A; Abbott, Joshua; Peretich, Michael E; Fulvio, Pasquale; Ciesielski, Peter N; and Donohoe, Bryon S. Metal-silicate catalysts: Single site, mesoporous systems without templates, Nanosci. Lett., 5, 6 (2015).
  4. Bu, Lintao; Himmel, Michael E; and Crowley, Michael F. The molecular origins of twist in cellulose I-beta, Carbohydrate Polymers, 125, 146–152 (2015). [10.1016/j.carbpol.2015.02.023]
  5. Carpita, Nicholas C; and McCann, Maureen C. Characterizing visible and invisible cell-wall mutant phenotypes, Exp. Bot., 66, 4145–4163 (2015). [10.1093/jxb/erv090].
  6. Ciesielski Peter N, Crowley, Michael F, Nimlos Mark R, Sanders Aric W., Wiggins Gavin M., Robichaud Dave, Donohoe Bryon S., Foust Thomas D. Biomass particle models with realistic morphology and resolved microstructure for simulations of intraparticle transport phenomena. Energy & Fuels, 29, 242-254 (2015). [1021/ef502204v]
  7. Degenstein, John D; Hurt, Matt; Murria, Priya; Easton, Mckay; Choudhari, Harshavardhan; Yang, Linan; Riedeman, James; Carlsen, Mark S; Nash, John J; Agrawal, Rakesh; Delgass, W. Nicholas; Ribeiro, Fabio H; and Kenttämaa, Hilkka I. Mass spectrometric studies of fast pyrolysis of cellulose, Eur. J. Mass Spectrom., 21, 321-326 (2015). [10.1255/ejms.1335]
  8. Degenstein, John D; Murria, Priya; Easton, Mckay; Sheng, Huaming; Hurt, Matt; Dow, Alex; Gao, Jinshan; Nash, John J; Agrawal, Rakesh; Delgass, W. Nicholas; Ribeiro, Fabio H; and Kenttämaa, Hilkka I. Fast pyrolysis of 13C-labeled cellobioses: Gaining insights into the mechanisms of fast pyrolysis of carbohydrates, Org. Chem., 80, 1909–1914 (2015). [10.1021/jo5025255]
  9. Dettmar, Chris M; Newman, JA; Toth, SJ; Becker, M; Fischetti, Robert F; and Simpson, GJ. Imaging local electric fields produced upon synchrotron X-ray exposure, PNAS, 112, 696-701 (2015). [10.1073/pnas.1407771112]
  10. Gençer, Emre; Dharik S. Mallapragada, François Maréchal, Mohit Tawarmalani, Rakesh Agrawal. Round-the-clock power supply and a sustainable economy via synergistic integration of solar thermal power and hydrogen processes. PNAS, 112, 15821-15826 (2015). [1073/pnas.1513488112]
  11. Hinkle J; Ciesielski PN; Gruchalla, K; Munch, K; and Donohoe, BS. Biomass accessibility analysis using electron tomography. Biotechnology for Biofuels, 8, 850-866 (2015). [10.1186/s13068-015-0395-8]
  12. Jarrell, Tiffany M; Riedeman, James; and Kenttämaa, Hilkka I. Gas-phase reactions of a novel chemical ionization reagent, ClMn2+, with polar and nonpolar analytes in a linear quadrupole ion trap, J. Mass Spectrom., 378, 206-211 (2015). [10.1016/j.ijms.2014.08.011]
  13. Jiang, Yuan; Yang, Linan; Bohn, Christine M; Li, Guannan; Han, Dong; Mosier, Nathan S; Miller, Jeffrey T; Kenttämaa, Hilkka I; and Abu-Omar, Mahdi M.Speciation and kinetic study of iron promoted sugar conversion to 5-hydroxymethylfurfural (HMF) and levulinic acid (LA) Chem. Front., 2, 1388-1396 (2015). [10.1039/C5QO00194C]
  14. Kim, Jeong Im; Dolan, Whitney; Anderson, Nickolas; and Chapple, Clint CS. Indole glucosinolate biosynthesis limits phenylpropanoid accumulation in Arabidopsis thaliana, Plant Cell, 27, 1529-1546 (2015). [10.1105/tpc.15.00127]
  15. Klein, Ian; Saha, Basudeb; and Abu-Omar, Mahdi M. Lignin depolymerization over Ni/C catalyst in methanol, a continuation: Effect of substrate and catalyst loading, Sci. and Technol., 5, 3242-3245 (2015). [10.1039/C5CY00490J]
  16. Liu, Bin; Wang, Ping; Kim, Jeong Im; Zhang, Delong; Xia, Yuanqin; Chapple, Clint CS; and Cheng, Ji-Xin. Vibrational fingerprint mapping reveals spatial distribution of functional groups of lignin in plant cell wall, Chem., 87, 9436–9442 (2015). [10.1021/acs.analchem.5b02434]
  17. McCann, Maureen C; and Carpita, Nicholas C. Biomass recalcitrance: a multi-scale, multi-factor and conversion-specific property, Exp. Bot., 66, 4109-4188 (2015). [10.1093/jxb/erv267]
  18. McCann, Maureen C; Penning, BW; Dugard, Christopher K; and Carpita, Nicholas C. Tailoring plant cell wall composition and architecture for conversion to liquid hydrocarbon biofuels, In: Direct Microbial Conversion of Biomass to Advanced Biofuels, 63-82 (2015).
  19. Njiojob, C; Rhinehart, JL; Bozell J; Long, BL. Synthesis of enantiomerically pure lignin dimer models for catalytic selectivity studies. Org. Chem. 2015, 80, 1771-1780 (2015). [10.1021/jo502685k]
  20. Parsell, T. H; Yohe, Sara; Degenstein, John D; Jarrell, Tiffany M; Klein, Ian; Gencer, Emre; Heweston , Barron; Hurt, Matt; Kim, Jeong Im; Choudhari, Harshavardhan; Saha, Basudeb; Meilan, Richard; Mosier, Nathan S; Ribeiro, Fabio H; Delgass, W. Nicholas; Chapple, Clint CS; Kenttämaa, Hilkka I; Agrawal, Rakesh; and Abu-Omar, Mahdi M. A synergistic biorefinery based on catalytic conversion of lignin prior to cellulose starting from lignocellulosic biomass, Green Chem., 17, 1492-1499 (2015). [10.1039/C4GC01911C]
  21. Saha, Basudeb; and Abu-Omar, Mahdi M. Current technologies, economics and perspective for 2, 5-dimethylfuran (DMF) production from biomass derived intermediates, ChemSusChem, 8, 1133–1142 (2015). [10.1002/cssc.201403329]
  22. Venkatakrishnan,  Vinod Kumar ; Delgass,   W. Nicholas;  Ribeiro, Fabio H.; Agrawal, Rakesh. Oxygen removal from intact biomass to produce liquid fuel range hydrocarbons via fast-hydropyrolysis and vapor-phase catalytic hydrodeoxygenation. Green Chem. 17, 178-183 (2015). [10.1039/C4GC01746C]
  23. Vinueza, Nelson R; Kim, ES; Gallardo, Vanessa A; Mosier, Nathan S; Abu-Omar, Mahdi M; Carpita, Nicholas C; and Kenttämaa, Hilkka I. Tandem mass spectrometric characterization of the conversion of xylose to furfural, Biomass and Bioenergy, 74, 1-5 (2015). [10.1016/j.biombioe.2014.10.012]
  24. Wei, Hui; Brunecky, Roman; Donohoe, Bryon S; Ding, S-Y; Ciesielski, Peter N; Yang, Shihui (Shane); Tucker, Melvin P; and Himmel, Michael E. Identifying the ionically bound cell wall and intracellular glycoside hydrolases in late growth stage Arabidopsis stems: Implications for the genetic engineering of bioenergy crops, Front. Plant Sci., 6, 315 (2015). [10.3389/fpls.2015.00315]
  25. Wei, Hui; Wang, Wei; Tucker, Melvin P; Himmel, Michael E; and Brunecky, Roman. Feedstock engineering and biomass pretreatments: New views for a greener biofuels process, In: Direct Microbial Conversion of Biomass to Advanced Biofuels, 3-12 (2015). [10.1016/B978-0-444-59592-8.00001-4]
  26. Wei, Hui; Yang, Haibing; Ciesielski, Peter N; Donohoe, Bryon S; McCann, Maureen C; Murphy, AS; Peer, WA; Ding, S-Y; and Himmel, Michael E. Transgenic ferritin overproduction enhances thermochemical pretreatments in Arabidopsis, Biomass & Bioenergy, 72, 55-64 (2015). [10.1016/j.biombioe.2014.11.022]
  27. Zeng, Yining; Zhao, Shuai; Wei, Hui; Tucker, Melvin P; Himmel, Michael E; Mosier, Nathan S; Meilan, Richard; and Ding, S-Y. In situ micro-spectroscopic investigation of lignin in poplar cell walls pretreated by Maleic acid, Biotechnology for Biofuels, 8, 126 (2015). [10.1186/s13068-015-0312-1]
  28. Zhang, Ximing; Hewetson, Barron; and Mosier, Nathan S. Kinetics of maleic acid and aluminum chloride catalyzed dehydration and degradation of glucose, Energy Fuels, 29, 2387-2393 (2015). [10.1021/ef502461s]

2014

  1. Alama, Md. Imteyaz; Sudipta Dea, Bhagat Singha, Basudeb Saha, Mahdi M. Abu-Omar (2014) Titanium hydrogenphosphate: An efficient dual acidic catalyst for 5-hydroxymethylfurfural (HMF) production. Applied Catalysis A: General, 486, 42-48. [1016/j.apcata.2014.08.019]  
  2. Al-musleh, Easa I; Mallapragada, Dharik S; Agrawal, Rakesh. Continuous power supply from a baseload renewable power plant. Applied Energy, 122, 83–93 (2014). [1016/j.apenergy.2014.02.015]
  3. Bonawitz, Nicholas D; Kim, Jeong Im; Tobimatsu, Yuki; Ciesielski, Peter N; Anderson, Nickolas A; Ximenes, Eduardo; Maeda, Junko; Ralph, John; Donohoe, Bryon S; Ladisch, Michael; Chapple, Clint. Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant. Nature, 509:376-380 (2014) [1038/nature13084]
  4. Bozell, Joseph J. Approaches to the selective catalytic conversion of lignin: A grand challenge for biorefinery development, Curr. Chem. 353, 229-255 (2014). [10.1007/128_2014_535]
  5. Bozell, Joseph J. Catalytic oxidation of lignin for the production of low molecular weight aromatics, In: Plants and BioEnergy, Advances in Plant Biology, Vol. 4, McCann, M., Buckeridge, M., Carpita, N. (Eds.). Springer, New York. pp. 277-289 (2014).
  6. Brunecky, Roman; Donohoe, Bryon S; Selig, Michael J; Wei, Hui; Resch, Michael; Himmel, Michael E. Basic Biological Research Relevant to Feedstock Conversion. In: Compendium of Bioenergy Plants Corn, CRC Press. Stephen L. Goldman, Chittaranjan Kole (eds.). 33-71 (2014).
  7. Bu, Lintao; Himmel, Michael E.; Crowley, Michael F. The molecular origins of twist in cellulose I-beta. Carbohydrate Polymers, 125, 146–152 (2015). [1016/j.carbpol.2015.02.023]
  8. Cai, Chao., Henty-Ridilla, Jessica L; Szymanski, Daniel B; Staiger Christopher J. (2014) Arabidopsis Myosin XI: A motor rules the tracks. Plant Physiology, 166, 1359-1370. [​10.​1104/​pp.​114.​244335]
  9. Chowdhury, Azhad U; Dettmar, Christopher M; Sullivan, Shane Z; Zhang, Shijie; Jacobs, Kevin T; Kissick, David J; Maltais, Thora; Simpson, Garth J. Kinetic trapping of metastable amino acid polymorphs. JACS, 136, 2404-2412 (2014).
  10. Ciesielski, Peter N; Resch, Michael G; Hewetson, Barron; Killgore, Jason; Curtin, Alexandra; Anderson, Nick; Chiaramonti, Ann N; Hurley, Donna C; Sanders, Aric; Himmel, Michael E; Chapple Clint; Mosier, Nathan; Donohoe, Bryon S. Engineering plant cell walls: Tuning lignin monomer composition for deconstructable biofuels feedstocks of resilient biomaterials. Green Chem. 16, 2627-2635 (2014). [1039/C3GC42422G]
  11. Ciesielski, Peter N; Wang, Wei; Chen, Xiaowen; Vinzant, Todd B; Tucker, Melvin P; Decker, Stephen R; Himmel, Michael E; Johnson, David K; Donohoe, Bryon S. Effect of mechanical disruption on the effectiveness of three reactors used for dilute acid pretreatment of corn stover. Part 2: Morphological and structural substrate analysis. Biotechnology for Biofuels, 7, 47 (2014). [1186/1754-6834-7-47]
  12. Dutta, Arghya; Gupta, Dinesh;  Patra, Astam K; Saha, Basudeb; Bhaumik, Asim. Synthesis of 5-Hydroxymethylfurural from carbohydrates using large-pore mesoporous tin phosphate. ChemSusChem, 7, 925-933 (2014). [1002/cssc.201300766]  
  13. Gencer, Emre; Al-musleh, Easa; Mallapragada, D S; Agrawal, R. Uninterrupted renewable power through chemical storage cycles. Current Opinion in Chemical Engineering, 5:29-36 (2014) [1016/j.coche.2014.04.001]
  14. Inouye, Hodeyo; Zhang, Yuan; Yang, L; Venugopalan, N; Fischetti, RF; Gleber, SC; Vogt, S; Fowle, W; Makowski, B; Tucker, M; Ciesielski, P; Donohoe, B; Matthews, J; Himmel, ME; Makowski, L. Multiscale deconstruction of molecular architecture in corn stover, Scientific Reports 4, 3756 (2014). [1038/srep03756]
  15. Jarrell, Tiffany M; Marcum, Christopher L; Sheng, Huaming; Owen, Benjamin C; Bozell, Joseph J; Kenttämaa, Hilkka I. Characterization of organosolv switchgrass lignin by using high performance liquid chromatography / high resolution tandem mass spectrometry using hydroxide-doped negative-ion mode electrospray ionization. Green Chem. 16:2713-2727 (2014). [1039/C3GC42355G]
  16. Jarrell, Tiffany; Riedeman, James; Carlsen, Mark; Replogle, Randall; Selby, Timothy; Kenttämaa, Hilkka. Multi-ported pulsed valve interface for a linear quadrupole ion trap mass spectrometer to enable rapid screening of multiple functional-group selective ion-molecule reactions. Anal. Chem., 86, 6533-6539 (2014) [1021/ac501034]
  17. Jarrell, T; Riedeman, J; Kenttämaa, H.I. Gas-phase reactions of a novel chemical ionization reagent, ClMn2+, with polar and nonpolar analytes in a linear quadrupole ion trap. J. Mass Spectrom., 378, 206-211 (2014 ). [10.1016/j.ijms.2014.08.011]
  18. Mallapragada, Dharik S; Agrawal, R. Limiting and achievable efficiencies for solar thermal hydrogen production. International Journal of Hydrogen Energy 39, 62–75 (2014). [1016/j.ijhydene.2013.10.075]
  19. Mallapragada, Dharik S; Duan, Gang; Agrawal, Rakesh. From shale gas to renewable energy based transportation solutions. Energy Policy 67, 499–507 (2014). [1016/j.enpol.2013.12.056]  
  20. Mazzotta, MG; Gupta, D; Saha, B; Patra, AK; Bhaumik, A; Abu-Omar, MM (2014) Efficient solid acid catalyst containing Lewis and Brønsted acid sites for the production of furfurals. ChemSusChem, 7, 2342-2350. [1002/cssc.201402007]
  21. Olek, Anna T; Rayon, Catherine; Makowski, Lee; Kim, Hyung Rae; Ciesielski, Peter; Badger, John; Paul, Lake N; Ghosh, Subhangi; Kihara, Daisuke; Crowley, Michael; Himmel, Michael E; Bolin, Jeffrey T; Carpita, Nicholas C. (2014) The structure of the catalytic domain of a plant cellulose synthase and its assembly into dimers. The Plant Cell 26, 2966-3009. [1105/tpc.114.126862].
  22. Penning, Bryan W; Sykes, Robert W; Babcock, Nicholas C; Dugard, Christopher K; Held, Michael A; Klimek, John F; Shreve, Jacob T; Fowler, Matthew; Ziebell, Angela; Davis, Mark F; Decker, Stephen R; Turner, Geoffrey B; Mosier, Nathan S; Springer, Nathan M; Thimmapuram, Jyothi; Weil, Clifford F; McCann, Maureen C; Carpita, Nicholas C. Genetic determinants for enzymatic digestion of lignocellulosic biomass are independent of those for lignin abundance in a maize recombinant inbred population. Plant Physiology, 165:1475-1487 (2014) ​[10.​1104/​pp.​114.​242446]
  23. Penning, Bryan W; Sykes, Robert W; Babcock, Nicholas C; Dugard, Christopher K; Klimek, John F; Gamblin, David; Davis, Mark; Filley, Timothy R; Mosier, Nathan S; Weil, Clifford F; McCann, Maureen C; Carpita Nicholas C. Validation of PyMBMS as a high throughput screen for lignin abundance in lignocellulosic biomass of grasses. Bioenerg. Res., 7:899-908. (2014) [1007/s12155-014-9410-3]
  24. Rayon, Catherine; Olek, A; Carpita, NC. Towards redesigning cellulose biosynthesis for improved bioenergy feedstocks, In: Plants and BioEnergy, Advances Plant Biology, Vol. 4, McCann, M., Buckeridge, M., Carpita, N. (Eds.) (2014). Springer, New York. pp 183-193.  
  25. Saha, Basudeb; Abu-Omar, Mahdi M. Advances in 5-hydroxymethylfurfural production from biomass in biphasic solvents. Green Chemistry, 16, 24–38 (2014) [1039/c3gc41324a
  26. Saha, Basudeb; Bohn Christine M; Abu-Omar, Mahdi M (2014) Zinc-assisted hydrodeoxygenation of biomass-derived 5-hydroxymethylfurfural to 2,5-dimethylfuran. ChemSusChem, 7, 3095-3101. [10.1002/cssc.201402530]
  27. Saha, Basudeb; Mosier, Nathan S; Abu-Omar, Mahdi M. Catalytic dehydration of lignocellulosic derived xylose to furfural, In: Plants and BioEnergy, Advances Plant Biology, Vol. 4, McCann, M., Buckeridge, M., Carpita, N. (Eds.) (2014). Springer, New York. pp 267-276. [10.1007/978-1-4614-9329-7_16]
  28. Vardon, Derek R. ; Sharma, Brajendra K.; Jaramillo, Humberto; Kim, Dongwook; Choe, Jong Kwon; Ciesielski, Peter N.; Strathmann, Timothy J. Hydrothermal catalytic processing of saturated and unsaturated fatty acids to hydrocarbons with glycerol for in situ hydrogen production. Green Chem. 16, 1507-1520 (2014). [1039/C3GC41798K].
  29. Venkatakrishnan, VK; Degenstein, JD; Smeltz, AD; Delgass, WN; Agrawal, R; Ribeiro, FH. High pressure fast-pyrolysis, fast-hydropyrolysis and catalytic hydrodeoxygenation of cellulose: Production of liquid fuel from biomass. Green Chem. 16, 792-802 (2014). [1039/C3GC41558A]
  30. Wegenhart, Benjamin L; Yang, Linan; Kwan, Soon Cheong; Harris, Remi; Kenttämaa, Hilkka I; Abu-Omar, Mahdi M. From furfural to fuel: Synthesis of furoins by organocatalysis and their hydrodeoxygenation by cascade catalysis. , 7, 2742-2747 Aug (2014) [10.1002/cssc.201402056]
  31. Zhang, Yan; Yu, Leiming; Kaeli, David; Makowski, Lee. Fast simulation of X-ray diffraction patterns from cellulose fibrils using GPUs. Proc. Northeast Bioengineering Conference. 2 p. (2014) [1109/NEBEC.2014.6972999]

2013

  1. Badger , John; Lal, Jyotsana; Harder, Ross; Inouye, Hideyo; Gleber, S. Charlotte; Vogt, Stefan; Robinson, Ian; and Makowski, Lee. THREE‐DIMENSIONAL IMAGING OF CRYSTALLINE INCLUSIONS EMBEDDED IN INTACT MAIZE STALKS. Scientific Reports, 3, 2843 (2103). [10.1038/srep02843]
  2. Biannic, Berenger; and Bozell, Joseph J. EFFICIENT COBALT-CATALYZED OXIDATIVE CONVERSION OF LIGNIN MODELS TO BENZOQUINONES. Org. Lett. 15, 2730-2733 (2013). [10.1021/ol401065r]
  3. Borton, David J.; Amundson, Lucas M.; Hurt, Matthew R.; Dow, Alex, Madden, Jeremy T.; Simpson, Garth J.; and Kenttämaa, Hilkka I. DEVELOPMENT OF A HIGH-THROUGHPUT LASER-INDUCED ACOUSTIC DESORPTION PROBE AND RASTER SAMPLING FOR LASER-INDUCED ACOUSTIC DESORPTION/ATMOSPHERIC PRESSURE CHEMICAL IONIZATION. Analytical Chemistry, 85, 5720-5726 (2013). [10.1021/ac4000333]
  4. Ciesielski, Peter N.; Matthews, James F.; Tucker, Melvin P.; Beckham, Gregg T.; Crowley, Michael F.; Himmel, Michael E.; and Donohoe, Bryon S. 3D ELECTRON TOMOGRAPHY OF PRETREATED BIOMASS INFORMS ATOMIC MODELING OF CELLULOSE MICROFIBRILS. ACS Nano, 7, 8011-8019 (2013). [10.1021/nn4031542]
  5. Dettmar, Christopher M.; and Simpson, Garth J. THEORETICAL FRAMEWORK FOR SHG MICROSCOPY: A MATRIX-BASED APPROACH. In: Second Harmonic Generation Imaging. (Francesco S. Pavone and Paul Campagnola, eds.) Taylor & Francis. pp. 3-20 (2013).
  6. Donohoe, Bryon S.; Kang, Byung-Ho; Gerl, Mathias J.; Gergely, Zachary R.; McMichael, Colleen M.; Bednarek, Sebastian Y.; and Staehelin, L. Andrew CIS-GOLGI CISTERNAL ASSEMBLY AND BIOSYNTHETIC ACTIVATION OCCUR SEQUENTIALLY IN PLANTS AND ALGAE. Traffic, 14, 551-567 (2013). [10.1111/tra.12052]
  7. Elder, Thomas, Bozell, Joseph J., Cedeno, Diana THE EFFECT OF AXIAL LIGAND ON THE OXIDATION OF SYRINGYL ALCOHOL BY CO(SALEN) ADDUCTS, Phys. Chem. Chem. Phys. 15, 7328-7337. (2013) [10.1039/C3CP44404J]
  8. Gulvik, Christopher A.; and Buchan Alison SIMULTANEOUS CATABOLISM OF PLANT-DERIVED AROMATIC COMPOUNDS RESULTS IN ENHANCED GROWTH FOR MEMBERS OF THE ROSEOBACTER LINEAGE. Appl. Environ. Microbiol. 79, 3716-3723 (2013). [10.1128/AEM.00405-13]
  9. Hurt, Matthew R. ; Degenstein, John C.; Gawecki, Piotr; Borton, David J., II; Vinueza, Nelson R.; Yang, Linan; Agrawal, Rakesh; Delgass, W. Nicholas; Ribeiro, Fabio H.; and Kenttämaa, Hilkka I. ON-LINE MASS SPECTROMETRIC METHODS FOR THE DETERMINATION OF THE PRIMARY PRODUCTS OF FAST PYROLYSIS OF CARBOHYDRATES AND FOR THEIR GAS-PHASE MANIPULATION. Anal. Chem., 22, pp. 10927–10934 (2013). [10.1021/ac402380h]
  10. Kim, Jeong Im; Ciesielski, Peter N.; Donohoe, Bryon S.; Chapple, Clint; and Li, Xu CHEMICALLY-INDUCED CONDITIONAL RESCUE OF THE REF8 MUTANT OF ARABIDOPSIS THALIANA REVEALS RAPID RESTORATION OF GROWTH AND SELECTIVE TURNOVER OF SECONDARY METABOLITE POOLS. Plant Physiology, 164, 584-595 (2013) [10.1104/pp.113.229393]
  11. Kissick, D. J., Dettmar, C. M., Becker, M., Mulichak, A. M., Cherezov, V., Ginell, S. L., Battaile, K. P., Keefe LJ, Fischetti RF, Simpson GJ. TOWARDS PROTEIN-CRYSTAL CENTERING USING SECOND-HARMONIC GENERATION (SHG) MICROSCOPY. Acta Crystallogr., Sect. D: Biol. Crystallogr. 69, 843-851 (2013). [10.1107/S0907444913002746]
  12. Liu, Jiliang; Inouye, Hideyo; Venugopalan, Nagarajan; Fischetti, Robert F.; Gleber, S. Charlotte ; Vogt, Stefan; Cusumano, Joanne C.; Kim, Jeong Im; Chapple, Clint; and Makowski, Lee. TISSUE SPECIFIC SPECIALIZATION OF THE NANOSCALE ARCHITECTURE OF ARABIDOPSIS. J. Struct. Biol. 184, 103-114. (2013). [10.1016/j.jsb.2013.09.013]
  13. Liu, Shuo, Senocak, Aysegul; Smeltz, Jessica L.; Yang, Linan; Wegenhart, Benjamin; Yi, Jing;. Kenttämaa, Hilkka I.; Ison, Elon A.; and Abu-Omar, Mahdi M. MECHANISM OF MTO-CATALYZED DEOXYDEHYDRATION (DODH) OF DIOLS TO ALKENES USING SACRIFICIAL ALCOHOLS. Organometallics, 32, 3210-3219 (2013). [10.1021/om400127z]
  14. Madden, J. T.; Toth, S. J.; Dettmar, C. M.; Newman, J. A.; Oglesbee, R. A.; Hedderich, H. G.; Everly, R. M.; Becker, M.; Ronau, J. A.; Buchanan, S. K.; Cherezov, V.; Morrow, M. E.; Xu, S.; Ferguson, D.; Makarov, O.; Das, C.; Fischetti, R.; Simpson, G. J. INTEGRATED NONLINEAR OPTICAL IMAGING MICROSCOPE FOR ON-AXIS CRYSTAL DETECTION AND CENTERING AT A SYNCHROTRON BEAMLINE. J. Synchrotron Rad. 20, 531-540 (2013). [10.1107/S0909049513007942]
  15. Owen, Benjamin C.; Jarrell, Tiffany M.; Schwartz, Jae C.; Oglesbee, Rob; Carlsen, Mark; Archibold, Enada F.; and Kenttämaa, Hilkka I. A DIFFERENTIALLY PUMPED DUAL LINEAR QUADRUPOLE ION TRAP (DLQIT) MASS SPECTROMETER: A MASS SPECTROMETER CAPABLE OF CLEAN MSN EXPERIMENTS. Anal. Chem., 85, 11284–11290 (2013). [10.1021/ac401956f]
  16. Parsell, Trenton H.; Owen, Benjamin C.; Klein, Ian; Jarrell, Tiffany M.; Marcum, Christopher L.; Haupert, Laura J.; Amundson, Lucas M.; Kenttämaa, Hilkka I.; Ribeiro, Fabio; Miller, Jeffrey T.; and Abu-Omar, Mahdi M. CLEAVAGE AND HYDRODEOXYGENATION (HDO) OF C–O BONDS RELEVANT TO LIGNIN CONVERSION USING PD/ZN SYNERGISTIC CATALYSIS, Chem. Sci., 4, 806-813 (2013) [10.1039/C2SC21657D]
  17. Saha, Basudeb; Gupta, Dinesh; Abu-Omar, Mahdi M.; Modak, Arindam; and Bhaumik, Asim. PORPHYRIN BASED POROUS ORGANIC POLYMER SUPPORTED IRON(III) CATALYST FOR EFFICIENT AEROBIC OXIDATION OF 5-HYDROXYMETHYLFURFURAL INTO 2,5-FURANDICARBOXYLIC ACID. Journal of Catalysis, 299, 316-320 (2013). [10.1016/j.jcat.2012.12.024]
  18. Sturgeon, Matthew R. ; O'Brien, Marykate H. ; Ciesielski, Peter N.; Katahira, Rui ; Kruger, Jacob S.; Chmely, Stephen C. ; Hamlin, Jessica ; Lawrence, Kelsey ; Hunsinger, Glendon B.; Foust, Thomas D. ; Baldwin, Robert M. ; Biddy, Mary J.; and Beckham, Gregg T.; LIGNIN DEPOLYMERISATION BY NICKEL SUPPORTED LAYERED-DOUBLE HYDROXIDE CATALYSTS. Green Chem. 16, 824-835 (2013). [10.1039/C3GC42138D]
  19. Tobimatsu, Yuki; Wagner, Armin; Donaldson, Lloyd; Mitra, Prajakta; Niculaes, Claudiu; Dima, Oana; Kim, Jeong Im; Anderson, Nickolas; Loque, Dominique; Boerjan, Wout; Chapple, Clint; and Ralph, John. VISUALIZATION OF PLANT CELL WALL LIGNIFICATION USING FLUORESCENCE-TAGGED MONOLIGNOLS. The Plant Journal, 76, 357–366 (2013). [10.1111/tpj.12299]
  20. Vinueza, N. R.; Gallardo, V. A.; Klimek, J. F.; Carpita, N. C.; and Kenttamaa, Hilkka I. ANALYSIS OF CARBOHYDRATES BY ATMOSPHERIC PRESSURE CHLORIDE ANION ATTACHMENT TANDEM MASS SPECTROMETRY, Fuel, 105, 235-246 (2013). [10.1016/j.fuel.2012.08.012]
  21. Vinueza, N.; Gallardo, V.; Klimek J. F.; Carpita, N. C.; and Kenttӓmaa, H.I. ANALYSIS OF XYLOGLUCANS BY AMBIENT CHLORIDE ATTACHMENT IONIZATION TANDEM MASS SPECTROMETRY. Carbohydrate Polymers, 98, 1203–1213 (2013). [10.1016/j.carbpol.2013.06.070]
  22. Yanagisawa, Makoto; Zhang, Chunhua; Szymanski, Daniel B. ARP2/3-DEPENDENT GROWTH IN THE PLANT KINGDOM: SCARS FOR LIFE. Frontiers in Plant Science, 4, 166. (2013). [10.3389/fpls.2013.00166]
  23. Yang, Y.; Hu, C. W.; and Abu-Omar, M. M. THE EFFECT OF HYDROCHLORIC ACID ON THE CONVERSION OF GLUCOSE TO 5-HYDROXYMETHYLFURFURAL IN ALCL3-H2O/THF BIPHASIC MEDIUM J. Mol. Catal. A: Chemical, 376, 98-102. (2013)
  24. Zhang, C.; Mallery, E.; Reagan, S.; Boyko, V.P.; Kotchoni, S.O.; and Szymanski, D.B. THE ENDOPLASMIC RETICULUM IS A RESERVOIR FOR WAVE/SCAR REGULATORY COMPLEX SIGNALING IN THE ARABIDOPSIS LEAF. Plant Physiol 162, 689-706. (2013). [10.1104/pp.113.217422 ]

2012

  1. Amundson, Lucas M.; Gallardo, Vanessa A.; Vinueza, Nelson R.; Owen, Benjamin C.; Reece, Jennifer N.; Habicht, Steven C.; Fu, Mingkun; Shea, Ryan C.; Mossman, Allen B.; and Kenttämaa, Hilkka I. IDENTIFICATION AND COUNTING OF OXYGEN FUNCTIONALITIES AND ALKYL GROUPS OF AROMATIC ANALYTES IN MIXTURES BY POSITIVE-MODE ATMOSPHERIC PRESSURE CHEMICAL IONIZATION TANDEM MASS SPECTROMETRY COUPLED WITH HIGH-PERFORMANCE LIQUID CHROMATOGRAPHY, Energy Fuels, 26, 2975–2989 (2012). [10.1021/ef2019098]
  2. Benatti, Matheus R.; Penning, Bryan W.; Carpita, Nicholas C.; and McCann, Maureen C. WE ARE GOOD TO GROW: DYNAMIC INTEGRATION OF CELL WALL ARCHITECTURE WITH THE MACHINERY OF GROWTH. Front. Plant Sci., 3, 187 (2012). [10.3389/fpls.2012.00187]
  3. Carpita, Nicholas C. PROGRESS IN THE BIOLOGICAL SYNTHESIS OF THE PLANT CELL WALL: NEW IDEAS FOR IMPROVING BIOMASS FOR BIOENERGY, Curr Opin Biotechnol., 23, 330-337 (2012). [10.1016/j.copbio.2011.12.003]
  4. Cedeno, Diana; and Bozell, Joseph J. CATALYTIC OXIDATION OF PARA-SUBSTITUTED PHENOLS BY A COBALT-SCHIFF BASE COMPLEX/O2-SELECTIVE CONVERSION OF SYRINGYL AND GUAIACYL LIGNIN MODELS TO BENZOQUINONES. Tetrahedron Letters, 53, 2380-2383 (2012). [10.1016/j.tetlet.2012.02.093]
  5. Clase, Kari L.; Halverson K, Heyden R USING SECOND LIFE IN A FORMAL STEM CLASSROOM TO LEARN HOW TO REPRESENT ANNOTATED GENOMES AND DEVELOP A SENSE OF COMMUNITY. Proceedings of the 2012 Annual Meeting of the National Association Research in Science Teaching in Indianapolis, Indiana. (2012).
  6. Donohoe, Bryon S.; Ciesielski, Peter N.; and Vinzant, Todd B. PRESERVATION AND PREPARATION OF LIGNOCELLULOSIC BIOMASS SAMPLES FOR MULTI-SCALE MICROSCOPY ANALYSIS, In: Michael E. Himmel (ed.), Biomass Conversion: Methods and Protocols, Methods in Molecular Biology, 908, 31-47 (2012). [10.1007/978-1-61779-956-3_4]
  7. Dutta, Saikat; De, Sudipta; Alam, Imteyaz; Abu-Omar, Mahdi M.; and Saha, Basudeb DIRECT CONVERSION OF CELLULOSE AND LIGNOCELLULOSIC BIOMASS INTO CHEMICAL AND BIOFUEL WITH METAL CHLORIDE CATALYSTS, J. Catal., 288, 8-15 (2012). [10.1016/j.jcat.2011.12.017]
  8. Dweikat, Ismail; Weil, Clifford; Moose, Stephen; Kochian, Leon; Mosier, Nathan; Ileleji, Klein; Brown, Patrick; Peer, Wendy; Murphy, Angus; Taheripour, Farzad; McCann, Maureen; and Carpita, Nicholas ENVISIONING THE TRANSITION TO A NEXT-GENERATION BIOFUELS INDUSTRY IN THE MIDWESt, Biofuels, Bioproducts and Biorefining, 6, 376-386 (2012). [10.1002/bbb.1342]
  9. Eismin, Ryan J.; Fu, Mingkun; Yem, Sonoeun; Widjaja, Fanny; and Kenttamaa, Hilkka I. IDENTIFICATION OF EPOXIDE FUNCTIONALITIES IN PROTONATED MONOFUNCTIONAL ANALYTES BY USING ION/MOLECULE REACTIONS AND COLLISION-ACTIVATED DISSOCIATION IN DIFFERENT ION TRAP TANDEM MASS SPECTROMETERS, Journal of the American Society for Mass Spectrometry, 23, 12-22 (2012). [10.1007/s13361-011-0249-y]
  10. Ertmer P., Freemyer S., Clase Kari L. THE GRAND CHALLENGE: HELPING TEACHERS LEARN/TEACH CUTTING EDGE SCIENCE VIA A PBL APPROACH. Proceedings of the 2012 Annual Meeting of the American Educational Research Association in Vancouver, British Columbia. (2012)
  11. Gao, Jinshan; Owen, Benjamin C.; Borton, David J.; Jin, Zhicheng; and Kenttamaa, Hilkka I. HPLC/APCI MASS SPECTROMETRY OF SATURATED AND UNSATURATED HYDROCARBONS BY USING HYDROCARBON SOLVENTS AS THE APCI REAGENT AND HPLC MOBILE PHASE, J Am Soc Mass Spectrom., 23, 816-822 (2012). [10.1007/s13361-012-0347-5]
  12. Goodpaster K, Adedokun O, Kirkham L, Ertmer P, Clase K, Weaver G THE IMPACT OF A PROFESSIONAL DEVELOPMENT WORKSHOP ON RURAL STEM TEACHERS’ SELF-EFFICACY AND BIOFUELS KNOWLEDGE. Proceedings of the 2012 Annual Meeting of the National Association Research in Science Teaching in Indianapolis, Indiana. (2012)
  13. Gqamana, Putuma P.; Duan, Penggao; Fu, Mingkun; Gallardo, Vanessa; and Kenttamaa, Hilkka I. A NOVEL CHEMICAL IONIZATION REAGENT ION FOR ORGANIC ANALYTES: THE AQUACHLOROMANGANESE (II) CATION [CLMN(H2O+)], Rapid Commun, Mass Spectrom., 26, 940-942 (2012). [10.1002/rcm.6187]
  14. Haupert, Laura J.; Owen, Benjamin C.; Marcum, Christopher L.; Jarrell, Tiffany M.; Pulliam, Christopher J.; Amundson, Lucas M.; Narra, Padmaja; Aqueel, Mohammad S.; Parsell, Trenton H.; Abu-Omar, Mahdi M.; and Kenttamaa, Hilkka I. CHARACTERIZATION OF MODEL COMPOUNDS OF PROCESSED LIGNIN AND THE LIGNOME BY USING ATMOSPHERIC PRESSURE IONIZATION TANDEM MASS SPECTROMETRY, Fuel, 95, 634-641 (2012). [10.1016/j.fuel.2011.12.015]
  15. Haupert, Levi M.; Dewalt, E. L., and Simpson, Garth J. MODELING THE SHG ACTIVITIES OF DIVERSE PROTEIN CRYSTALS, Acta Crystallogr D Biol Crystallogr. 68, 1513-1521 (2012) [10.1107/S0907444912037638]
  16. Henty, Jessica L.; Bledsoe, Samuel W.; Khurana, Parul; Meagher, Richard B.; Day, Brad; Blanchoin, Laurent; and Staiger, Christopher J. ARABIDOPSIS ACTIN DEPOLYMERIZING FACTOR4 MODULATES THE STOCHASTIC DYNAMIC BEHAVIOR OF ACTIN FILAMENTS IN THE CORTICAL ARRAY OF EPIDERMAL CELLS, Plant Cell, 23, 3711-3726 (2012). [10.1105/tpc.111.090670]
  17. Henty-Ridilla, Jessica L.; Shimono, Masaki; Li, Jiejie; Chang, Jeff H., Day, Brad; and Staiger, Christopher J. THE PLANT ACTIN CYTOSKELETON RESPONDS TO SIGNALS FROM MICROBE-ASSOCIATED MOLECULAR PATTERNS, PLOS Pathogens, 9, 3711-3726 (2012). [10.1371/journal.ppat.1003290]
  18. Kim, Eurick S.; Liu, Shuo; Abu-Omar, Mahdi M.; and Mosier, Nathan S. SELECTIVE CONVERSION OF BIOMASS HEMICELLULOSE TO FURFURAL USING MALEIC ACID WITH MICROWAVE HEATING, Energy Fuels, 26, 1298-1304 (2012). [10.1021/ef2014106]
  19. Matthews, James F.; Beckham, Gregg T.; Bergenstrahle-Wohlert, Malin; Himmel, Michael E.; Brady, John W.; and Crowley, Michael F. COMPARISON OF CELLULOSE Iβ SIMULATIONS WITH THREE CARBOHYDRATE FORCE FIELDS. J. Chem. Theory Comput., 8, 735-738 (2012). [10.1021/ct2007692]
  20. Matthews, James F.; Himmel, Michael E.; and Crowley, Michael F. CONVERSION OF CELLULOSE IΑ TO IΒ VIA A HIGH TEMPERATURE INTERMEDIATE (I-HT) AND OTHER CELLULOSE PHASE TRANSFORMATIONS. Cellulose, 19, 297-306 (2012). [10.1007/s10570-011-9608-x]
  21. Mertz, Rachel A.; Olek, Anna T.; and Carpita, Nicholas C. ALTERATIONS IN CELL-WALL GLYCOSYL LINKAGE STRUCTURE OF ARABIDOPSIS MURUS MUTANTS, Carbohydr Polym, 89, 331-339 (2012). [10.1016/j.carbpol.2012.02.044]
  22. Murphy, Angus S.; and Peer, Wendy A. PLANT ROPS AND RICS: THE MISSING INTERMEDIARIES OF AUXIN-REGULATED ENDOCYTOSIS. Current Biology, 22, R576-R578 (2012) July. [10.1016/j.cub.2012.06.008]
  23. Owen, Benjamin C.; Gao, Jinshan; Borton, David J., II; Amundson, Lucas M.; Archibold, Enada F.; Tan, Xiaoli L.; Azyat, Khalid; Tykwinski, Rik; Gray, Murray; and Kenttämaa, Hilkka I. CARBON DISULFIDE REAGENT ALLOWS THE CHARACTERIZATION OF NONPOLAR ANALYTES BY ATMOSPHERIC PRESSURE CHEMICAL IONIZATION MASS SPECTROMETRY, Rapid Communications in Mass Spectrometry, 25, 1924-1928 (2012). [10.1002/rcm.5063]
  24. Owen, Benjamin C.; Haupert, Laura M.; Jarrell, Tiffany M.; Marcum, Christopher L.; Parsell, Trenton H.; Abu-Omar, Mahdi M.; Bozell, Joseph J.; Black, Stuart K.; and Kenttamaa, Hilkka I. HIGH PERFORMANCE LIQUID CHROMATOGRAPHY/HIGH-RESOLUTION MULTIPLE STAGE TANDEM MASS SPECTROMETRY USING NEGATIVE-ION MODE HYDROXIDE-DOPED ELECTROSPRAY IONIZATION FOR THE CHARACTERIZATION OF LIGNIN DEGRADATION PRODUCTS, Analytical Chemistry, 84, 6000–6007 (2012). [10.1021/ac300762y]
  25. Saha, Basudeb; Gupta, Dinesh; Abu-Omar, Mahdi M.; Modak, Arindam; and Bhaumik, Asim. PORPHYRIN BASED POROUS ORGANIC POLYMER SUPPORTED IRON(III) CATALYST FOR EFFICIENT AEROBIC OXIDATION OF 5-HYDROXYMETHYLFURFURAL INTO 2,5-FURANDICARBOXYLIC ACID. Journal of Catalysis, 299, 316-320 (2013). [10.1016/j.jcat.2012.12.024]
  26. Toth S.J.; Madden, J. T.; Taylor, L.S.; Marsac, P.; Simpson, G. J. (2012) Selective Imaging of APIs in Powdered Blends with Common Excipients Utilizing TPE-UVF and UV-SONICC. Anal Chem. 84, 5869–5875 (2012). [10.1021/ac300917t]
  27. Vinueza, N. R.; Gallardo, V. A.; Klimek, J. F.; Carpita, N. C.; and Kenttamaa, Hilkka I. ANALYSIS OF CARBOHYDRATES BY ATMOSPHERIC PRESSURE CHLORIDE ANION ATTACHMENT TANDEM MASS SPECTROMETRY, Fuel, 105, 235-246 (2013). [10.1016/j.fuel.2012.08.012]
  28. Wegenhart, Benjamin L.; Liu, Shuo; Thom, Melanie; Stanley, David; and Abu-Omar, Mahdi M. SOLVENT-FREE METHODS FOR MAKING ACETALS DERIVED FROM GLYCEROL AND FURFURAL AND THEIR USE AS A BIODIESEL FUEL COMPONENT, ACS Catalysis, 2, 2524-2530 (2012). [10.1021/cs300562e]
  29. Yang, Y.; Abu-Omar, M. M.; and Hu, C. W. HETEROPOLYACID CATALYZED CONVERSION OF FRUCTOSE, SUCROSE, AND INULIN TO 5-ETHOXYMETHYLFURFURAL, A LIQUID BIOFUEL CANDIDATE, Applied Energy, 99, 80-84 (2012). [10.1016/j.apenergy.2012.04.049]
  30. Yang, Y.; Hu, C. W.; and Abu-Omar, M. M. CONVERSION OF CARBOHYDRATES AND LIGNOCELLULOSIC BIOMASS INTO 5-HYDROXYMETHYLFURFURAL USING ALCL3•6H2O CATALYST IN A BIPHASIC SOLVENT SYSTEM, Green Chemistry, 14, 509-513 (2012). [10.1039/C1GC15972K]
  31. Yang, Y.; Hu, C. W.; and Abu-Omar, M. M. CONVERSION OF GLUCOSE INTO FURANS IN THE PRESENCE OF ALCL3 IN AN ETHANOL-WATER SOLVENT SYSTEM, Bioresource Technology, 116, 190-194 (2012). [10.1016/j.biortech.2012.03.126]
  32. Yang, Y.; Hu, C. W.; and Abu-Omar, M. M. SYNTHESIS OF FURFURAL FROM XYLOSE, XYLAN, AND BIOMASS USING ALCL3•6H2O IN BIPHASIC MEDIUM VIA XYLOSE ISOMERIZATION TO XYLULOSE, ChemSusChem, 5, 405-410 (2012). [10.1002/cssc.201100688]
  33. Yang, Y.; Xiang, X.; Tong, D.; Hu, C. W.; and Abu-Omar, M. M. ONE-POT SYNTHESIS OF 5-HYDROXYMETHYLFURFURAL DIRECTLY FROM STARCH OVER SO2-4 /ZRO2-AL2O3 SOLID CATALYST, Bioresource Technology, 116, 302-306 (2012). [10.1016/j.biortech.2012.03.081]

2011

  1. Amundson, Lucas M; Eismin, Ryan J.; Reece, Jennifer N.; Fu, Mingkun; Habicht, Steven C.; Mossman, Allan B.; Shea, Ryan C.; and Kenttämaa, Hilkka I. IDENTIFICATION AND COUNTING OF OXYGEN FUNCTIONALITIES IN AROMATIC ANALYTES RELATED TO LIGNIN BY USING NEGATIVE-MODE ELECTROSPRAY IONIZATION AND MULTIPLE COLLISION-ACTIVATED DISSOCIATION STEPS. Energy Fuels, 25, 3212–3222 (2011). [10.1021/ef200141w]
  2. Amundson, Lucas M; Owen, Ben C; Gallardo, Vanessa A; Habicht, Steven C.; Fu, Mingkun; Shea, Ryan C; Mossman, Allan B; and Kenttämaa, Hilkka I. DIFFERENTIATION OF REGIOISOMERIC AROMATIC KETOCARBOXYLIC ACIDS BY POSITIVE MODE ATMOSPHERIC PRESSURE CHEMICAL IONIZATION COLLISION-ACTIVATED DISSOCIATION TANDEM MASS SPECTROMETRY IN A LINEAR QUADRUPOLE ION TRAP MASS SPECTROMETER. J. Am. Soc. Mass Spectrom., 22, 670-682 (2011). [10.1007/s13361-011-0079-y]
  3. Carpita, Nicholas C. UPDATE ON MECHANISMS OF PLANT CELL WALL BIOSYNTHESIS: HOW PLANTS MAKE CELLULOSE AND OTHER (1→4)-Β-D-GLYCANS, Plant Physiology, 155, 171-184 (2011). [10.1104/pp.110.163360]
  4. Day, Brad; Henty, Jessica L.; Porter, Katie J.; and Staiger, Christopher J. THE PATHOGEN-ACTIN CONNECTION: A PLATFORM FOR DEFENSE SIGNALING IN PLANTS. Annu. Rev. Phytopathol., 49, 483-506 (2011). [10.1146/annurev-phyto-072910-095426]
  5. Habicht, Stephen C; Vinueza, Nelson R; Amundson, Lucas M; and Kenttämaa, Hilkka I COMPARISON OF FUNCTIONAL GROUP SELECTIVE ION-MOLECULE REACTIONS OF TRIMETHYL BORATE IN DIFFERENT ION TRAP MASS SPECTROMETERS, J. Am. Soc. Mass Spectrom., 22, 520-530 (2011). [10.1007/s13361-010-0050-3]
  6. Haupert, Levi M.; Simpson, Garth J.; and Slipchenko, Lyudmila V. COMPUTATIONAL INVESTIGATION OF AMINE-OXYGEN EXCIPLEX FORMATION, J. Phys. Chem. A,, 115, 10159–10165 (2011). [10.1021/jp205866a]
  7. Jin, Zhicheng; Daiya, Shivani; and Kenttämaa, Hilkka I. CHARACTERIZATION OF NONPOLAR LIPIDS AND STEROIDS BY USING LASER-INDUCED ACOUSTIC DESORPTION/CHEMICAL IONIZATION, ATMOSPHERIC PRESSURE CHEMICAL IONIZATION, AND ELECTROSPRAY IONIZATION MASS SPECTROMETRY, Int. J. Mass Spectrom., 301, 234-239 (2011). [10.1016/j.ijms.2010.11.001]
  8. Lal, Jyotsana; Harder, Ross; and Makowski, Lee X-RAY COHERENT DIFFRACTION IMAGING OF CELLULOSE FIBRILS IN SITU. Proc. Eng. in Medicine and Biol., Conference (IEEE). (2011)
  9. Madden, J. T.; DeWalt, E. L.; and Simpson, G. J. TWO-PHOTON EXCITED UV FLUORESCENCE FOR PROTEIN CRYSTAL DETECTION, Acta Crystallogr., Sect. D: Biol. Crystallogr., 67, 839–846 (2011). [10.1107/S0907444911028253]
  10. Matthews, James F.; Bergenstrhle, Malin; Beckham, Gregg T.; Himmel, Michael E.; Nimlos, Mark R.; Brady, John W.; and Crowley, Michael F. HIGH-TEMPERATURE BEHAVIOR OF CELLULOSE I. J. Phys. Chem. B, 115, 2155–2166 (2011). [10.1021/jp1106839]
  11. Somuramasami, J; Duan, P; Amundson, Lucas M; Archibold, Enada; Winger, B E; and Kenttämaa, Hilkka I. DIFFERENTIATION OF PROTONATED AROMATIC REGIOISOMERS RELATED TO LIGNIN BY REACTIONS WITH TRIMETHYLBORATE IN A FOURIER-TRANSFORM ION CYCLOTRON RESONANCE MASS SPECTROMETER, J. Am. Soc. Mass Spectrom., 22, 1040-1051 (2011). [10.1007/s13361-011-0099-7]
  12. Wei, H.; Donohoe, B. S.; Vinzant, T. B.; Ciesielski, P. N.; Wang, W.; Gedvilas, L. M.; Yeng, Y X; Johnson, D. K.; Ding, S. Y.; Himmel, M. E.; and Tucker, M. P. ELUCIDATING THE ROLE OF FERROUS ION COCATALYST IN ENHANCING DILUTE ACID PRETREATMENT OF LIGNOCELLULOSIC BIOMASS, Biotechnology for Biofuels, 4, 48 (2011). [10.1186/1754-6834-4-48]

2010

  1. Blanchoin, L.; Boujemaa-Paterski, R.; Henty, Jessica L.; Khurana, P.; and Staiger, Chris J. ACTIN DYNAMICS IN PLANT CELLS: A TEAM EFFORT FROM MULTIPLE PROTEINS ORCHESTRATES THIS VERY FAST-PACED GAME, Curr. Opin. in Plant Biol., 13, 714-723 (2010). [10.1016/j.pbi.2010.09.013]
  2. Khurana, Parul; Henty, Jessica L; Huang, Shanjin; Staiger, Andrew M.; Blanchoin, Laurent; and Staiger, Christopher J. ARABIDOPSIS VILLIN1 AND VILLIN3 HAVE OVERLAPPING AND DISTINCT ACTIVITIES IN ACTIN BUNDLE FORMATION AND TURNOVER, Plant Cell, 22, 2727-2748 (2010). [10.1105/tpc.110.076240]

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