Analysis

APPLICATION

SOFTWARE PACKAGES

GENOME & TRANSCRIPTOME ASSEMBLY

ABySS, SOAP

(Eukaryote)

Velvet

(Prokaryote)

Trinity

(Transcriptome)

Newbler

(454)

ALIGNMENT/MAPPING

Novoalign

TopHat

BOWTIE

BWA

EXPRESSION ANALYSIS

Cufflinks

DESeq

edgeR

 

METAGENOMICS

MG-RAST

MEGAN

   

EPIGENETICS

SICER

DANPOS2

Useq

MeDUSA

VARIANT ANALYSIS (SNP, InDel, CNV)

SAMtools

CNVSeq

 

Contact

Bioinformatics Core
Young Hall 1022
155 South Grant Street
West Lafayette, Indiana 47907

bioinformatics@purdue.edu
Phone: 765.496.6252
jyothit@purdue.edu

Purdue University, 610 Purdue Mall, West Lafayette, IN 47907, (765) 494-4600

© 2015 Purdue University | An equal access/equal opportunity university | Copyright Complaints | Maintained by The Bindley Bioscience Center

Trouble with this page? Disability-related accessibility issue? Please contact The Bindley Bioscience Center at bindleybioscience@purdue.edu.